Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,075,380 – 9,075,493 |
Length | 113 |
Max. P | 0.745787 |
Location | 9,075,380 – 9,075,493 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 91.15 |
Mean single sequence MFE | -47.04 |
Consensus MFE | -40.30 |
Energy contribution | -40.90 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.06 |
Mean z-score | -1.40 |
Structure conservation index | 0.86 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.745787 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9075380 113 - 20766785 CACAUCCGUGAGGGGCAGCUCGAACACGUGGCUAAUGCCACCCGCGGUGACCAAGCAGGGCAGCGAUAGCACCACGUUGUCCUGGAUUCCGUUUAGGCCCUUCAUGUCCGUGC (((...((((((((((...........(((((....)))))..((((........((((((((((.........))))))))))....))))....))))))))))...))). ( -46.20) >DroSec_CAF1 40268 113 - 1 CACAUCCGUGAGGGGCAGCUCAAACACGUGGCUGAUGCCGCCCGAGGUGACCAAGCAGGGCAGCGAUAGCACUACGUUGUCCUGUAUGCCGCUCAGGCCCUUCAUGUCCGUGC (((...((((((((((...........(((((....))))).(..((((..((.(((((((((((.((....))))))))))))).)).))))..)))))))))))...))). ( -50.00) >DroSim_CAF1 42084 113 - 1 CACAUCCGUGAGGGGCAGCUCGAACACGUGGCUAAUGCCACCCGAGGUGACCAAGCAGGGCAGCGAUAGCACCACGUUGUCCUGGAUGCCGCUCAGGCCCUUCAUGUCCGUGC (((...((((((((((..((((.....(((((....))))).))))(((..((..((((((((((.........))))))))))..)).)))....))))))))))...))). ( -48.60) >DroEre_CAF1 47693 113 - 1 CACAUCCGUGAGGGGCAGCUCGAAGACGUGGCUGAUGCCACCGGCGGUGACCAGGCUGGGCAGCGACAGCACCACGUUGUCCUUGAUGCCGUGCAUUCCCUGCAUAUCGGUGC (((..((....))((((....((.((((((((((.(((..((((((....)...)))))...))).))))..)))))).)).....))))(((((.....)))))....))). ( -42.90) >DroYak_CAF1 43221 113 - 1 CACAUCCGUGAGGGGCAGCUCGAACACGUGGCUGAUGCCACCGGCGGUGACCAGGCAGGGCAGCGAUAGCACCACGUUGUCCUUGAUGCCGUUCAUGCCCUGCAUGUCCGUGC (((...((((.((((((....((((..(((((....))))).((((....).....(((((((((.........)))))))))....))))))).)))))).))))...))). ( -47.50) >consensus CACAUCCGUGAGGGGCAGCUCGAACACGUGGCUGAUGCCACCCGCGGUGACCAAGCAGGGCAGCGAUAGCACCACGUUGUCCUGGAUGCCGUUCAGGCCCUUCAUGUCCGUGC (((...((((((((((.(((.......(((((....)))))..(.(....)).)))(((((((((.........))))))))).............))))))))))...))). (-40.30 = -40.90 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:02 2006