Locus 2554

Sequence ID 2R_DroMel_CAF1
Location 9,071,913 – 9,072,033
Length 120
Max. P 0.780902
window4201

overview

Window 1

Location 9,071,913 – 9,072,033
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.67
Mean single sequence MFE -34.74
Consensus MFE -32.12
Energy contribution -32.00
Covariance contribution -0.12
Combinations/Pair 1.11
Mean z-score -1.25
Structure conservation index 0.92
SVM decision value 0.56
SVM RNA-class probability 0.780902
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9071913 120 - 20766785
UUCUAGGUGGGAAUUUUCUAUUGAUGUCCACUAUAACAGCGCUGUCUUGUCCAUAAAAACGAGGCAGCAUCGACACUCUAGCCUGGAUGCACUGCACCAUGGCCAAGGACCAGAGAAAAC
((((.....))))((((((.(((..((((...........((((((((((........))))))))))............((((((.(((...)))))).)))...))))))))))))). ( -35.40)
>DroSec_CAF1 36972 120 - 1
UUCUAGGUGGGAAUUUUCUAUUGAUGUCCACUAUAAUAGCGCUGUCUUGUCCAUAAAAACGGGGCAGCAUCGACACCCUAGCCUGGAUGCACUGCACCAUGGCCAAGGACCAGAGAAAAC
((((.(((((..(((.......)))..)))))........((((((((((........))))))))))........(((.((((((.(((...)))))).)))..))).....))))... ( -35.60)
>DroSim_CAF1 38634 120 - 1
UUCUAGGUGGGAAUUUUCUAUUGAUGUCCACUAUAAUAGCGCUGUCUUGUCCAUAAAAACGAGGCAGCAUCGACACCCUAGCCUGGAUGCACUGCACCAUGGCCAAGGACCAGAGAAAAC
((((.(((((..(((.......)))..)))))........((((((((((........))))))))))........(((.((((((.(((...)))))).)))..))).....))))... ( -36.40)
>DroEre_CAF1 42569 120 - 1
UUCUAGGUGGGAAUUUUCUAUUGAUGUCUACUAUAAUAGCACUGUCUUGUCCGUAAAAGCGAGGCAGCAUCGACACUCUAGCCUGGAUGCACUGCACCAUGGCCAAGGACCAGAGAAAAC
((((...(((..........((((((.(((......)))..(((((((((........)))))))))))))))..(..(.((((((.(((...)))))).))).)..).))).))))... ( -29.60)
>DroYak_CAF1 39023 120 - 1
UUCUAGGUGGGAAUUUUCUAUUGAUGUCCACUAUGAUAGCACUGUCUUGUCCGUAAAAGCGAGGCAGCAUCGACACUCUGGCCUGGAUGCACUGCACCAUGGCCAAGGACCAGAGGAAUC
((((.(((.(((....((....))..)))....((((.((..((((((((........))))))))))))))...(..((((((((.(((...)))))).)))))..))))))))..... ( -36.70)
>consensus
UUCUAGGUGGGAAUUUUCUAUUGAUGUCCACUAUAAUAGCGCUGUCUUGUCCAUAAAAACGAGGCAGCAUCGACACUCUAGCCUGGAUGCACUGCACCAUGGCCAAGGACCAGAGAAAAC
((((.....))))((((((.(((..((((...........((((((((((........))))))))))............((((((.(((...)))))).)))...))))))))))))). (-32.12 = -32.00 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:50 2006