Locus 2552

Sequence ID 2R_DroMel_CAF1
Location 9,070,963 – 9,071,083
Length 120
Max. P 0.821511
window4198

overview

Window 8

Location 9,070,963 – 9,071,083
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.67
Mean single sequence MFE -45.20
Consensus MFE -40.66
Energy contribution -41.26
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.47
Structure conservation index 0.90
SVM decision value 0.68
SVM RNA-class probability 0.821511
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9070963 120 + 20766785
UACGAGGGCCUCACCAUGACGCGCGCCUCGCUGCUGCAGGUGUUCAAGCGACACGGACUGGAGCCACUGGAUCCCAUCAACCAGAAGUUCGACCCCAAUCAGCACGAGGCGCUGUUCCAG
.....((((.((.....)).))((((((((.(((((...(((((.....)))))((..(.((((..((((..........))))..)))).)..))...)))))))))))))....)).. ( -44.60)
>DroSec_CAF1 36031 120 + 1
UACGAUGGCCUCACCAUGACGCGCGCCUCGCUGCUGCAGGUGUUCAAGCGACACGGACUGGAGCCACUGGAUCCCAUCAACCAGAAGUUCGACCCCAAUCAGCACGAGGCGCUGUUCCAG
....((((.....))))((((.((((((((.(((((...(((((.....)))))((..(.((((..((((..........))))..)))).)..))...))))))))))))))))).... ( -44.10)
>DroSim_CAF1 37696 120 + 1
UACGAGGGCCUCACCAUGACGCGCGCCUCGCUGCUGCAGGUGUUCAAGCGACACGGACUGGAGCCACUGGAUCCCAUCAACCAGAAGUUCGACCCCAAUCAGCACGAGGCGCUGUUCCAG
.....((((.((.....)).))((((((((.(((((...(((((.....)))))((..(.((((..((((..........))))..)))).)..))...)))))))))))))....)).. ( -44.60)
>DroEre_CAF1 41647 120 + 1
UACGAGGGCCUCAGCAUGACGCGCGCCUCGCUGCUGCAGGUGUUCAAGCGACACGGACUGGAGCCUCUGGAUCCCAUCAACCAGAAGUUCGACCCCAAUCAGCACGAGGCGCUGUUCCAG
.....((((.((.....)).))((((((((.(((((...(((((.....)))))((..(.((((.(((((..........))))).)))).)..))...)))))))))))))....)).. ( -47.20)
>DroYak_CAF1 38098 120 + 1
UACGAGGGACUCAGCAUGACGCGCGCCUCGCUGCUGCAGGUGUUCAAGCGACACGGACUGGAGCCUCUGGAUCCCAUCAACCAGAAGUUCGACCCCAACCAGCACGAGGCACUGUUCCAG
.....(((((...((.....))..((((((.(((((...(((((.....)))))((..(.((((.(((((..........))))).)))).)..))...)))))))))))...))))).. ( -45.50)
>consensus
UACGAGGGCCUCACCAUGACGCGCGCCUCGCUGCUGCAGGUGUUCAAGCGACACGGACUGGAGCCACUGGAUCCCAUCAACCAGAAGUUCGACCCCAAUCAGCACGAGGCGCUGUUCCAG
.....((((.((.....)).))((((((((.(((((...(((((.....)))))((..(.((((..((((..........))))..)))).)..))...)))))))))))))....)).. (-40.66 = -41.26 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:47 2006