Locus 2551

Sequence ID 2R_DroMel_CAF1
Location 9,070,468 – 9,070,588
Length 120
Max. P 0.995746
window4196 window4197

overview

Window 6

Location 9,070,468 – 9,070,588
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.08
Mean single sequence MFE -39.60
Consensus MFE -38.98
Energy contribution -38.82
Covariance contribution -0.16
Combinations/Pair 1.09
Mean z-score -1.15
Structure conservation index 0.98
SVM decision value 0.37
SVM RNA-class probability 0.708683
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9070468 120 + 20766785
AACCGACUGAACAAACAGAUCAGCGACGCCAAGAUCUUUGGCAUCCAGAGCUUCUGCAAGGAUCUGCUCGAGGUGGCGGACACACUGGGACAUGCCACACAGGCGGUGCCCAAGGAUAAG
...((.((((.(.....).))))))..((((((...))))))((((.((((.(((....)))...))))...(((.....)))..((((...((((.....))))...)))).))))... ( -38.00)
>DroSec_CAF1 35605 120 + 1
AACCGACUGAACAAACAGAUCAGCGACGCCAAGAUCUUCGGCAUCCAGAGCUUCUGCAAGGAUCUGCUCGAGGUGGCGGACACCCUGGGACAUGCCACACAGGCGGUGCCCAAGGAUAAG
...((.((((.(.....).)))))).(((((....(((((((((((...((....))..)))..))).))))))))))....((.((((...((((.....))))...)))).))..... ( -41.60)
>DroSim_CAF1 37350 120 + 1
AACCGACUGAACAAACAGAUCAGCGACGCCAAGAUCUUUGGCAUCCAGAGCUUCUGCAAGGAUCUGCUCGAGGUGGCGGACACCCUGGGACAUGCCACACAGGCGGUGCCCAAGGAUAAG
...((.((((.(.....).))))))..((((((...))))))((((.((((.(((....)))...))))..((((.....)))).((((...((((.....))))...)))).))))... ( -40.60)
>DroEre_CAF1 41177 120 + 1
AACCGACUUAACAAACAGAUCAGCGACGCCAAGAUCUUCGGCAUCCAGAGCUUCUGCAAGGACCUGCUCGAAGUGGCGGACACCCUGGGACAUGCCACACAGGCGGUGCCCAAGGACAAG
..........................(((((....(((((((((((...((....))..)))..))).))))))))))....((.((((...((((.....))))...)))).))..... ( -37.10)
>DroYak_CAF1 37537 120 + 1
AACCGACUGAAUAAACAGAUCAGCGACGCCAAGAUCUUCGGCAUCCAGAGCUUCUGCAAGGACCUGCUCGAGGUGGCGGACACCCUGGGACAUGCCACACAGGCGGUGCCCAAGGAAAAG
...((.((((.........)))))).(((((....(((((((((((...((....))..)))..))).))))))))))....((.((((...((((.....))))...)))).))..... ( -40.70)
>consensus
AACCGACUGAACAAACAGAUCAGCGACGCCAAGAUCUUCGGCAUCCAGAGCUUCUGCAAGGAUCUGCUCGAGGUGGCGGACACCCUGGGACAUGCCACACAGGCGGUGCCCAAGGAUAAG
...((.((((.(.....).)))))).(((((....(((((((((((...((....))..)))..))).))))))))))....((.((((...((((.....))))...)))).))..... (-38.98 = -38.82 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 9,070,468 – 9,070,588
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.08
Mean single sequence MFE -46.53
Consensus MFE -46.02
Energy contribution -45.94
Covariance contribution -0.08
Combinations/Pair 1.05
Mean z-score -1.76
Structure conservation index 0.99
SVM decision value 2.61
SVM RNA-class probability 0.995746
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9070468 120 - 20766785
CUUAUCCUUGGGCACCGCCUGUGUGGCAUGUCCCAGUGUGUCCGCCACCUCGAGCAGAUCCUUGCAGAAGCUCUGGAUGCCAAAGAUCUUGGCGUCGCUGAUCUGUUUGUUCAGUCGGUU
..((..((.(((((..(((.....))).))))).))..)).(((.(....((((((((((....(((.....)))((((((((.....))))))))...))))))))))....).))).. ( -43.00)
>DroSec_CAF1 35605 120 - 1
CUUAUCCUUGGGCACCGCCUGUGUGGCAUGUCCCAGGGUGUCCGCCACCUCGAGCAGAUCCUUGCAGAAGCUCUGGAUGCCGAAGAUCUUGGCGUCGCUGAUCUGUUUGUUCAGUCGGUU
..((((((.(((((..(((.....))).))))).)))))).(((.(....((((((((((....(((.....)))((((((((.....))))))))...))))))))))....).))).. ( -48.40)
>DroSim_CAF1 37350 120 - 1
CUUAUCCUUGGGCACCGCCUGUGUGGCAUGUCCCAGGGUGUCCGCCACCUCGAGCAGAUCCUUGCAGAAGCUCUGGAUGCCAAAGAUCUUGGCGUCGCUGAUCUGUUUGUUCAGUCGGUU
..((((((.(((((..(((.....))).))))).)))))).(((.(....((((((((((....(((.....)))((((((((.....))))))))...))))))))))....).))).. ( -48.70)
>DroEre_CAF1 41177 120 - 1
CUUGUCCUUGGGCACCGCCUGUGUGGCAUGUCCCAGGGUGUCCGCCACUUCGAGCAGGUCCUUGCAGAAGCUCUGGAUGCCGAAGAUCUUGGCGUCGCUGAUCUGUUUGUUAAGUCGGUU
.....(((((((((..(((.....))).)).))))))).....(((((((((((((((((....(((.....)))((((((((.....))))))))...))))))))))..)))).))). ( -48.50)
>DroYak_CAF1 37537 120 - 1
CUUUUCCUUGGGCACCGCCUGUGUGGCAUGUCCCAGGGUGUCCGCCACCUCGAGCAGGUCCUUGCAGAAGCUCUGGAUGCCGAAGAUCUUGGCGUCGCUGAUCUGUUUAUUCAGUCGGUU
.....(((((((((..(((.....))).)).)))))))...(((.......(((((((((....(((.....)))((((((((.....))))))))...))))))))).......))).. ( -44.04)
>consensus
CUUAUCCUUGGGCACCGCCUGUGUGGCAUGUCCCAGGGUGUCCGCCACCUCGAGCAGAUCCUUGCAGAAGCUCUGGAUGCCGAAGAUCUUGGCGUCGCUGAUCUGUUUGUUCAGUCGGUU
.....(((((((((..(((.....))).)).)))))))...(((.(....((((((((((....(((.....)))((((((((.....))))))))...))))))))))....).))).. (-46.02 = -45.94 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:46 2006