Locus 2550

Sequence ID 2R_DroMel_CAF1
Location 9,068,552 – 9,068,643
Length 91
Max. P 0.988326
window4195

overview

Window 5

Location 9,068,552 – 9,068,643
Length 91
Sequences 4
Columns 91
Reading direction forward
Mean pairwise identity 94.87
Mean single sequence MFE -19.11
Consensus MFE -17.68
Energy contribution -18.31
Covariance contribution 0.63
Combinations/Pair 1.07
Mean z-score -2.80
Structure conservation index 0.93
SVM decision value 2.12
SVM RNA-class probability 0.988326
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9068552 91 + 20766785
GCCUAAUUUGUACGUGUUUUUGAGUGCUUUUAACCUCUCAAACAAACAUUUUUGUUGUUUAUUUUUAGAACCGCUUAUAAACAAUAUACAA
.......(((((..(((((.((((((.((((((......((((((.((....))))))))....)))))).)))))).)))))...))))) ( -18.50)
>DroSim_CAF1 35462 91 + 1
GCCUAAUUUGUACGUGUUUUUGAGUGCUUUUAACCUCUCAAACAAACAUUUUUGUUGUUUAUUUUUAGAACCGAUUAUAAACAAUAUACAA
.......(((((.(((((((((((.(........).)))))..))))))...((((((((((..((......))..))))))))))))))) ( -15.90)
>DroEre_CAF1 39285 91 + 1
ACCUAAUUUGUACGUGUUUUUGAGUGCUUUUAACCUCUCUAGCAAACAUUUUUGUUGUUUAAUUUUAGAACCGCUUACAAACAAUGUACAA
.......((((((((((((.((((((.((((((......(((((((....))))))).......)))))).)))))).)))).)))))))) ( -21.92)
>DroYak_CAF1 35603 90 + 1
GCCUAAUUUGUACGUGUU-UUGGGUGCUUUUAACCUCUCAAACAAACAUUUUUGUUGUUUAUUUUUAGAACCGCUUAUAAACAAUGUACAA
.......(((((((((((-(((((((.((((((......((((((.((....))))))))....)))))).)))))).)))).)))))))) ( -20.10)
>consensus
GCCUAAUUUGUACGUGUUUUUGAGUGCUUUUAACCUCUCAAACAAACAUUUUUGUUGUUUAUUUUUAGAACCGCUUAUAAACAAUAUACAA
.......((((((((((((.((((((.((((((.......((((((....))))))........)))))).)))))).)))).)))))))) (-17.68 = -18.31 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:44 2006