Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,068,283 – 9,068,423 |
Length | 140 |
Max. P | 0.996798 |
Location | 9,068,283 – 9,068,402 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.74 |
Mean single sequence MFE | -27.76 |
Consensus MFE | -20.90 |
Energy contribution | -20.82 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.18 |
Mean z-score | -1.49 |
Structure conservation index | 0.75 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9068283 119 + 20766785 GUACACCGCACUGAUUGUUAACGAAUUCUUUCGAUGCAAAAA-AAAAACUGGUCAAAGUUUUGGCUAGGGCUGUCAAUAAGUCGAUUAAAUAAUCGAUAGCAUCGAUUUCUUGGCCCAUC ................(((((.(((.....(((((((.....-.....((((((((....))))))))............(((((((....))))))).))))))).))))))))..... ( -29.10) >DroSec_CAF1 33487 120 + 1 GUAUACCGCACUGAUUUUUAACGAAUUCUUUCGAUGCAAAAAAAAAAACUGGUCAAAGUUUUGGCUAGGGCUGUCAAUAGGCCGAUUAAAUAAUCGAUAGCAUCGAUUUCUUGGCCUAUC (.((((((((.(((................))).)))...........((((((((....)))))))))).)))).(((((((((......(((((((...)))))))..))))))))). ( -30.09) >DroSim_CAF1 35193 119 + 1 GUAUACCGCACUGAUUUUUAACGAAUUCUUUCGAUGCAAAAA-AAAAACUGGUCAAAGUUUUGGCUAGGGCUGUCAAUAGGCCGAUUAAAUAAUCGAUAGCAUCGAUUUCAUUGUCUAUC ............(((...(((.(((.....(((((((.....-.....((((((((....))))))))((((.......))))((((....))))....))))))).))).)))...))) ( -27.70) >DroEre_CAF1 39019 116 + 1 GCUCACAGCACUGAUUUUUAUAGAAUUCUUUCGAUGCAAA----AAAACUGGUCAAAGUUUUGGCUAGGGCUGUCAAUAAGUCGAUAAAAUAAUCGAUACUAUCGAUGUUUUGGGCUAUC (((((.((((.((((..((((.(((....)))(((((...----....((((((((....)))))))).)).))).))))((((((......))))))...)))).)))).))))).... ( -28.50) >DroYak_CAF1 35337 115 + 1 GUUCACCGAAAUGAUUUUUAACGAAUUCUUGCAAUGCAAA-----AAACUGGUCAAAGUUUUGACUAGGGCUGUCAAUAAGUCGAUGAAAUAAUCGAUAGUCUCGAUUUCUGGGCUUAUC (((((..(((((((..............((((...)))).-----...((((((((....))))))))((((........((((((......)))))))))))).))))))))))..... ( -23.40) >consensus GUACACCGCACUGAUUUUUAACGAAUUCUUUCGAUGCAAAAA_AAAAACUGGUCAAAGUUUUGGCUAGGGCUGUCAAUAAGUCGAUUAAAUAAUCGAUAGCAUCGAUUUCUUGGCCUAUC ..............................(((((((...........((((((((....))))))))((((.......))))(((......)))....))))))).............. (-20.90 = -20.82 + -0.08)
Location | 9,068,323 – 9,068,423 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 86.91 |
Mean single sequence MFE | -29.84 |
Consensus MFE | -23.94 |
Energy contribution | -23.34 |
Covariance contribution | -0.60 |
Combinations/Pair | 1.17 |
Mean z-score | -3.02 |
Structure conservation index | 0.80 |
SVM decision value | 2.75 |
SVM RNA-class probability | 0.996798 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9068323 100 + 20766785 AA-AAAAACUGGUCAAAGUUUUGGCUAGGGCUGUCAAUAAGUCGAUUAAAUAAUCGAUAGCAUCGAUUUCUUGGCCCAUCGCGAAAGUAAGCGCGAAAUUU ..-.((((((......))))))((((((((..(((.((..(((((((....)))))))...)).))).))))))))..(((((........)))))..... ( -28.00) >DroSec_CAF1 33527 101 + 1 AAAAAAAACUGGUCAAAGUUUUGGCUAGGGCUGUCAAUAGGCCGAUUAAAUAAUCGAUAGCAUCGAUUUCUUGGCCUAUCGCGGCAGCAAGCGCGAAAUUU ........((((((((....)))))))).((((((.(((((((((......(((((((...)))))))..)))))))))...))))))............. ( -34.90) >DroSim_CAF1 35233 100 + 1 AA-AAAAACUGGUCAAAGUUUUGGCUAGGGCUGUCAAUAGGCCGAUUAAAUAAUCGAUAGCAUCGAUUUCAUUGUCUAUCGCGAAAACAAGCGCGAAAUUU ..-.....((((((((....))))))))((((.......))))(((.....(((((((...))))))).....)))..(((((........)))))..... ( -27.90) >DroEre_CAF1 39059 97 + 1 ----AAAACUGGUCAAAGUUUUGGCUAGGGCUGUCAAUAAGUCGAUAAAAUAAUCGAUACUAUCGAUGUUUUGGGCUAUCGCGAGAGGCAGCGCGGAAUUU ----....((((((((....)))))))).((((((....((((..(((((((.(((((...)))))))))))))))).((....))))))))......... ( -30.20) >DroYak_CAF1 35377 96 + 1 -----AAACUGGUCAAAGUUUUGACUAGGGCUGUCAAUAAGUCGAUGAAAUAAUCGAUAGUCUCGAUUUCUGGGCUUAUCGCGUAAGCAAGCGCGAAAUUU -----...((((((((....)))))))).........((((((.(.(((...(((((.....))))))))).))))))((((((......))))))..... ( -28.20) >consensus AA_AAAAACUGGUCAAAGUUUUGGCUAGGGCUGUCAAUAAGUCGAUUAAAUAAUCGAUAGCAUCGAUUUCUUGGCCUAUCGCGAAAGCAAGCGCGAAAUUU ........((((((((....))))))))((((.......))))........((((((.....))))))..........(((((........)))))..... (-23.94 = -23.34 + -0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:43 2006