Locus 2548

Sequence ID 2R_DroMel_CAF1
Location 9,065,935 – 9,066,052
Length 117
Max. P 0.555723
window4192

overview

Window 2

Location 9,065,935 – 9,066,052
Length 117
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 82.68
Mean single sequence MFE -35.92
Consensus MFE -23.77
Energy contribution -25.72
Covariance contribution 1.95
Combinations/Pair 1.24
Mean z-score -1.75
Structure conservation index 0.66
SVM decision value 0.04
SVM RNA-class probability 0.555723
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9065935 117 - 20766785
UCCUGAUCAGCCGCAGGCGGUUGCCUCGUUUCCGCUCCACAGCUCCUUGAGCAUCGAAGAGUUCAACAAUGUGAAGUGGGAGGAUAUAAAUGAUUGCAAUAACAAUUGCAUUCGGGA
((((((.((((((....))))))((((....(((((.((((.....((((((........))))))...)))).)))))))))...........((((((....)))))).)))))) ( -40.30)
>DroSec_CAF1 31116 117 - 1
UCCUGAUCAGCCGCAGGCGGUUGCCUCGUUUCCGCUCCACAGCUCCUUGAGCAUCGAAGAGUUCAACAAUGUGAAGUGGGAGGAUAUAAACGAUUGCAACAACAAUUGCAUUCGGGA
(((....((((((....))))))((((....(((((.((((.....((((((........))))))...)))).))))))))).......(((.(((((......))))).)))))) ( -39.10)
>DroSim_CAF1 32863 104 - 1
UCCUGAUCAGCCGCAGGCGGUUGCCUCGUUUCCGCUCCACAGCUCCUUGAGCAUCGAAGAGUUCAACAAUGUGAAGUGGGAGGAUAUAAACGAUUGCAACAACA-------------
.((((........))))..(((((.(((((((((((.((((.....((((((........))))))...)))).)))))))........))))..)))))....------------- ( -30.50)
>DroEre_CAF1 36770 117 - 1
UCCUGAUCUACCGCAGGCGGUUCCCUCCUUUCCGCUACACAGCUCCUUGAGCAUCGAAGAGUUUAACAAUGUGAAGUGGGAGGAUGUAAACGAUUGCAAUAACAACUGCAUUCGAGA
.........((((....))))...((((((((((((.((((((((.(((.....))).)))).......)))).)))))))))........((.((((........)))).))))). ( -33.61)
>DroYak_CAF1 33062 117 - 1
UCCUGGUCAACCGCAGGCGGUUGUCUCGUUUCCGCUGCAUAGCUCCUUGAGCAUCGAAGAGUUUAACAAUGUGAAGUGGGAGGAUAUGAGCGAUUGCAAUAACAACUGCAUUCGCGA
((((((.((((((....)))))).))....((((((.((((((((.(((.....))).)))).......)))).)))))))))).....((((.((((........)))).)))).. ( -39.81)
>DroAna_CAF1 35065 117 - 1
ACCCGAAACACCGCAGGUGGAUGAUCUAUUUCCUCUGCACAGUUCCCUGAGUAUCGAGGAGUUUAAUAAUGUUAAGUGGGAGGACAUUAAUGAUUCCAAUAAUAACUUUGUUGAACA
.(((((.((...(((((.(((.........)))))))).(((....))).)).))).)).(((((((((.((((..(((((...((....)).)))))....)))).))))))))). ( -32.20)
>consensus
UCCUGAUCAACCGCAGGCGGUUGCCUCGUUUCCGCUCCACAGCUCCUUGAGCAUCGAAGAGUUCAACAAUGUGAAGUGGGAGGAUAUAAACGAUUGCAAUAACAACUGCAUUCGAGA
(((....((((((....))))))......(((((((.((((.....((((((........))))))...)))).))))))))))......(((.((((........)))).)))... (-23.77 = -25.72 +   1.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:41 2006