Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,061,806 – 9,061,923 |
Length | 117 |
Max. P | 0.979479 |
Location | 9,061,806 – 9,061,923 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 93.16 |
Mean single sequence MFE | -30.59 |
Consensus MFE | -26.78 |
Energy contribution | -27.46 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.06 |
Mean z-score | -1.79 |
Structure conservation index | 0.88 |
SVM decision value | 1.84 |
SVM RNA-class probability | 0.979479 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9061806 117 + 20766785 UCGAUUUUAGUGGCCUGCAUCUGGCACAUGUCACACAUUCGUCACACGUGUUAACAGUAGUUAAAAUUCGCAGAAAAUUACGAACCCAAACAACAUGUGUGGGCCACUCGAGAGGCA ..(.(((((((((((..(((.((((((.(((.((......)).))).))))))...((.(((....((((..........))))....))).))..)))..))))))).))))..). ( -31.90) >DroSec_CAF1 27058 117 + 1 UCAAUUUUAGUGGCCUGCAUCUGGAACAUGUCACACAUUCGUCACACGUGUUAACAGCAGUUAAAAUUCGCAGAAAAUUACGAACCCAAACAACAUGUGUGGGCCACUCGAGAGCCA ....(((((((((((..(((.((.(((((((...((....))...))))))).......(((....((((..........))))....)))..)).)))..))))))).)))).... ( -30.00) >DroSim_CAF1 29138 117 + 1 UCAAUUUUAGUGGCCUGCAUCUGGAACAUGUCACACAUUCGUCACACGUGUUAACAGCAGUUAAAAUUCGCAGAAAAUUACGAACCCAAACAACAUGUGUGGGCCACUCGAGAGCCA ....(((((((((((..(((.((.(((((((...((....))...))))))).......(((....((((..........))))....)))..)).)))..))))))).)))).... ( -30.00) >DroEre_CAF1 32762 117 + 1 UCGAUUUUAGUGGCCUACAUCUGGCACAUGUCACACAUUCGUCACACGUGUUAACAGUAGUUCAAAUUCGCUGGAAACUACAAACGAAAACAACAUGUGUGGGCCACUUGAGAGCCC ....((((((((((((((((.((((((.(((.((......)).))).)))).....(((((((..........).))))))............)).))))))))))).))))).... ( -34.50) >DroYak_CAF1 28979 116 + 1 UCGAUUUUAGUGGCCUGCAUCUGGCACAUGUCACACAUUCGUCACACGUGUUA-CCGUAGUUAAAAUUCGCUGAAAAUUACAAACCAAAACAACAUGUGUGGCCCACUCGAGAGCCA ((((.....(((((.(((.....)))...)))))......((((((((((((.-..((((((.............))))))..........))))))))))))....))))...... ( -26.54) >consensus UCGAUUUUAGUGGCCUGCAUCUGGCACAUGUCACACAUUCGUCACACGUGUUAACAGUAGUUAAAAUUCGCAGAAAAUUACGAACCCAAACAACAUGUGUGGGCCACUCGAGAGCCA ....((((((((((((((((.((((((.(((.((......)).))).)))).....((((((.............))))))............)).)))))))))))).)))).... (-26.78 = -27.46 + 0.68)
Location | 9,061,806 – 9,061,923 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 93.16 |
Mean single sequence MFE | -34.44 |
Consensus MFE | -30.16 |
Energy contribution | -31.12 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.03 |
Mean z-score | -1.37 |
Structure conservation index | 0.88 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.805163 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9061806 117 - 20766785 UGCCUCUCGAGUGGCCCACACAUGUUGUUUGGGUUCGUAAUUUUCUGCGAAUUUUAACUACUGUUAACACGUGUGACGAAUGUGUGACAUGUGCCAGAUGCAGGCCACUAAAAUCGA .........(((((((......(((.(((((((((((((......))))))).(((((....)))))(((((((.(((....))).)))))))))))))))))))))))........ ( -36.40) >DroSec_CAF1 27058 117 - 1 UGGCUCUCGAGUGGCCCACACAUGUUGUUUGGGUUCGUAAUUUUCUGCGAAUUUUAACUGCUGUUAACACGUGUGACGAAUGUGUGACAUGUUCCAGAUGCAGGCCACUAAAAUUGA .........((((((((((((((((.(((..((((((((......))))))))..))).))(((((.(....)))))).)))))))...(((.......))))))))))........ ( -34.50) >DroSim_CAF1 29138 117 - 1 UGGCUCUCGAGUGGCCCACACAUGUUGUUUGGGUUCGUAAUUUUCUGCGAAUUUUAACUGCUGUUAACACGUGUGACGAAUGUGUGACAUGUUCCAGAUGCAGGCCACUAAAAUUGA .........((((((((((((((((.(((..((((((((......))))))))..))).))(((((.(....)))))).)))))))...(((.......))))))))))........ ( -34.50) >DroEre_CAF1 32762 117 - 1 GGGCUCUCAAGUGGCCCACACAUGUUGUUUUCGUUUGUAGUUUCCAGCGAAUUUGAACUACUGUUAACACGUGUGACGAAUGUGUGACAUGUGCCAGAUGUAGGCCACUAAAAUCGA .........(((((((.(((((.((.((((..((((((........))))))..)))).)))))...(((((((.(((....))).)))))))......)).)))))))........ ( -34.60) >DroYak_CAF1 28979 116 - 1 UGGCUCUCGAGUGGGCCACACAUGUUGUUUUGGUUUGUAAUUUUCAGCGAAUUUUAACUACGG-UAACACGUGUGACGAAUGUGUGACAUGUGCCAGAUGCAGGCCACUAAAAUCGA ((((((......))))))............(((((((((.................((....)-)..(((((((.(((....))).))))))).....))))))))).......... ( -32.20) >consensus UGGCUCUCGAGUGGCCCACACAUGUUGUUUGGGUUCGUAAUUUUCUGCGAAUUUUAACUACUGUUAACACGUGUGACGAAUGUGUGACAUGUGCCAGAUGCAGGCCACUAAAAUCGA .........((((((((((((((((((((..((((((((......))))))))..)))........((((((.......)))))))))))))).....))..)))))))........ (-30.16 = -31.12 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:40 2006