Locus 2545

Sequence ID 2R_DroMel_CAF1
Location 9,060,508 – 9,060,613
Length 105
Max. P 0.979532
window4187

overview

Window 7

Location 9,060,508 – 9,060,613
Length 105
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 75.63
Mean single sequence MFE -21.95
Consensus MFE -15.15
Energy contribution -14.65
Covariance contribution -0.50
Combinations/Pair 1.25
Mean z-score -2.08
Structure conservation index 0.69
SVM decision value 1.84
SVM RNA-class probability 0.979532
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9060508 105 - 20766785
UUAAAUAAACAAUAAAGCAAUGUUGCUGGCCAGAAUAAAUAAACCCAAAGGGGGUUAAUUAUUUAUUCAAAC-UAAACUAG------C--------ACAAAGUUUGAACACACAACUGAA
..............((((..(((.(((((...((((((((((((((.....))))...))))))))))....-....))))------)--------)))..))))............... ( -19.80)
>DroSim_CAF1 27822 105 - 1
UUAAAUAAACAUUAAAGCAAUAUUGUUGGGCAGAAUAAAUAAACCCAUAGGGGGUUAAUUAUUUAUUCAAAC-UAAACGAA------C--------GCGUGCUUUGUACACACAAAUGAC
............(((((((...(((((((...((((((((((((((.....))))...))))))))))...)-).))))).------.--------...))))))).............. ( -22.50)
>DroEre_CAF1 31473 103 - 1
UUAAACAGACAUUAGAGCAGAGUUGUUGGCUAGAAUAAACAAAUCCACAAGGGGUUAAUUAUUUAUUUAAAG-UAACU--------AC--------UCAAAGUUUGUACAAACAAAUGAA
....((((((.((.(((...(((((((.....((((((...(((((.....)))))..))))))......))-)))))--------.)--------)).))))))))............. ( -16.00)
>DroYak_CAF1 27599 120 - 1
UUAAACAAACAUUGGAGCAGUGUUGUUGGCUAGAGUAAAUAAAUCCAGAAGGGGUUAAUUAUUUAUUCAAACCUAACCGAACGCGUGCUUUGUGGUACAAAGUUUGUUCACACAAACGAA
.........((.(..((((((((((((((...((((((((((((((.....))))...))))))))))....)))))..))))).))))..))).......((((((....))))))... ( -29.50)
>consensus
UUAAACAAACAUUAAAGCAAUGUUGUUGGCCAGAAUAAAUAAACCCAAAAGGGGUUAAUUAUUUAUUCAAAC_UAAACGAA______C________ACAAAGUUUGUACACACAAAUGAA
....((((((.....((((....)))).....((((((((((((((.....))))...)))))))))).................................))))))............. (-15.15 = -14.65 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:36 2006