Locus 2543

Sequence ID 2R_DroMel_CAF1
Location 9,047,919 – 9,048,031
Length 112
Max. P 0.959146
window4185

overview

Window 5

Location 9,047,919 – 9,048,031
Length 112
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 91.62
Mean single sequence MFE -17.96
Consensus MFE -15.22
Energy contribution -15.82
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.81
Structure conservation index 0.85
SVM decision value 1.50
SVM RNA-class probability 0.959146
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9047919 112 - 20766785
CACAG-AAAAAAAGAAGACAAAUAAAAGUAUUAACAAAUAUAGAUGUAAAUAGUAUUUACCUUACUUUAUGUGCCCUCUCCGCAAAUAGCCGCAAUCUCAUUUGACUGUGGCA
((((.-....(((((((..(((((....((((.(((........))).)))).)))))..))).)))).))))...............((((((.((......)).)))))). ( -19.30)
>DroSec_CAF1 13416 112 - 1
CACCGAAAAAAAAGAAGACAAAUAAAAGUAUUAACAAAUAUAGAUGUAAAUAGUAUUUACCUUACUUUAUGUUCCCUAUCGACAAAUAGCCGCAAUCUCAC-UGACUGUGGCA
....(((...(((((((..(((((....((((.(((........))).)))).)))))..))).))))...)))..............((((((.((....-.)).)))))). ( -18.70)
>DroSim_CAF1 13415 106 - 1
------AAAAAAAGAAGACAAAUAAAAGUAUUAACAAAUAUAGAUGUAAAUAGUAUUUACCUUACUUUAUGUGCCCUCUCGACAAAUAGCCGCAAUCUCAU-UGACUGUGGCA
------....(((((((..(((((....((((.(((........))).)))).)))))..))).))))....................((((((.((....-.)).)))))). ( -17.10)
>DroEre_CAF1 18779 106 - 1
CAC---AAA-AAAGAAGACAAAUAAAAGUAUUAACAAAUAUAGAUGUAAAUAGUAUUUACCUUACUUAAUAUGCCCU--CCGCAAAUAGCCGCAAUCUCAU-UGACUGUGGCA
...---...-.((((((..(((((....((((.(((........))).)))).)))))..))).)))....(((...--..)))....((((((.((....-.)).)))))). ( -17.60)
>DroYak_CAF1 14508 107 - 1
CAC---AAAAAAAGAAAACAAAUAAAAGUAUUAACAAAUAUAGAUGUAAAUAGUAUUUACCUUACUGUAUAUGCCCU--CCACAAACAGCCGCAAUCUCAU-UGACUGUGGCA
...---............................((.((((((..((((((...))))))....)))))).))....--.........((((((.((....-.)).)))))). ( -17.10)
>consensus
CAC___AAAAAAAGAAGACAAAUAAAAGUAUUAACAAAUAUAGAUGUAAAUAGUAUUUACCUUACUUUAUGUGCCCU_UCCACAAAUAGCCGCAAUCUCAU_UGACUGUGGCA
..........(((((((..(((((....((((.(((........))).)))).)))))..))).))))....................((((((.((......)).)))))). (-15.22 = -15.82 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:34 2006