Locus 2542

Sequence ID 2R_DroMel_CAF1
Location 9,040,389 – 9,040,483
Length 94
Max. P 0.500000
window4184

overview

Window 4

Location 9,040,389 – 9,040,483
Length 94
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 81.29
Mean single sequence MFE -19.62
Consensus MFE -12.43
Energy contribution -12.77
Covariance contribution 0.34
Combinations/Pair 1.23
Mean z-score -1.49
Structure conservation index 0.63
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9040389 94 - 20766785
GACUGAUGGAUAUGUAAUGUCCAUAAUUAGCUUAUGACCGCUUAGGUUUUAACUGUCGUAAGACCCAUAAAAAUAGUUGACAAAAAAA-AGGAUC
(((((((((((((...)))))))).......((((((((.....))).......(((....))).)))))...)))))..........-...... ( -18.30)
>DroSec_CAF1 6009 93 - 1
GACUGAUGGAUAUGUAAUGUCCAUAAUUAGUUUACGACCGCUUAGGUUUUAACUAUCGUUAGAGCCAUAAAAAUAGUUGAGAAA-AAA-AGAAUC
(((((((((((((...))))))))....................(((((((((....))))))))).......)))))......-...-...... ( -20.00)
>DroSim_CAF1 6036 93 - 1
GACUGAUGGAUAUGUAAUGUCCAUAAUUAGUUUACGACCGCUUAGGUUUUAACUAUAGUAAGACCCAUAAAAAUAGUUGACAAG-AAA-AGUAUC
(((((((((((((...))))))))...(((((...((((.....))))..)))))..................)))))......-...-...... ( -16.80)
>DroEre_CAF1 11522 87 - 1
AACUGAUGGAUAUGUAAUGUCCAUAAUUAGUUUACGACCGCUUAGGUUCCGGCUGUCGUAAGACCCAUAAAAUUAGUUGACAAC--------AUC
(((((((((((((...))))))........((((((((.(((........))).)))))))).........)))))))......--------... ( -21.50)
>DroYak_CAF1 6432 95 - 1
GACUGAUGGAUAUGUAAUGUCCAUAAUUAGUUUACGACCGCUUAGGUUUUGGCUGUCGUAAGCCCCAUAAAAAUCGUUGACAAAAAAAAGGAAUC
(((..((((((((...)))))))).....(((((((((.(((........))).)))))))))............)))................. ( -23.20)
>DroAna_CAF1 13572 84 - 1
UCCUGAUGGAUAUGUAAUGUCCAUAAUUACUUUACGGCUGUUUACGUUUCGUCUGUAAAAA-----AU-AAAAUAGUUGCCAGGGAAU-AG----
(((((((((((((...))))))))..........(((((((((...(((........))).-----..-.))))))))).)))))...-..---- ( -17.90)
>consensus
GACUGAUGGAUAUGUAAUGUCCAUAAUUAGUUUACGACCGCUUAGGUUUUAACUGUCGUAAGACCCAUAAAAAUAGUUGACAAA_AAA_AG_AUC
(((((((((((((...))))))))...(((((...((((.....))))..)))))..................)))))................. (-12.43 = -12.77 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:33 2006