Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,034,293 – 9,034,389 |
Length | 96 |
Max. P | 0.565013 |
Location | 9,034,293 – 9,034,389 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 84.67 |
Mean single sequence MFE | -41.78 |
Consensus MFE | -31.25 |
Energy contribution | -33.05 |
Covariance contribution | 1.79 |
Combinations/Pair | 1.06 |
Mean z-score | -1.94 |
Structure conservation index | 0.75 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.565013 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9034293 96 + 20766785 UCGUCCUGCCCGCCUCGGCAUCCGAAU----------CGG--GAACAGAUGCACCAUGCAUGAUGGCCGGGCAGGAUGCGGUCAUCUGGGGUAUUCCAGAGAAUUCCC .((((((((((((((((((((....((----------((.--...).))).....)))).))).)).))))))))))).((...((((((....)))))).....)). ( -40.70) >DroSec_CAF1 31 96 + 1 UCGUCCUGCCCGCCUCGGCAUCCGCAU----------CGG--GAACAGAUGUACCAUGCAUGAUGGCCGGGCAGGAUGCGGUCAGCUGGGGGAUUCCAGAGGAAUCCC .((((((((((((((((((((..((((----------((.--...).)))))...)))).))).)).)))))))))))(((....))).((((((((...)))))))) ( -49.40) >DroSim_CAF1 30 96 + 1 UCGUCCUGCCCGCCUCGGCAUCCGAAU----------CGG--GAACAGAUGUACCAUGCAUGAUGGCCGGGCAGGAUGCGGUCAGCUGGGGGAUUCCAGAGGAUUCCC .((((((((((((((((((((....((----------((.--...).))).....)))).))).)).)))))))))))(((....)))((((((((....)))))))) ( -43.00) >DroEre_CAF1 5564 96 + 1 UCGUCCUGCCCGCCUCGGCAUCCGAAU----------CGG--GAACAGAAGUACCAUGCAUGAUGGCCGGGCAGGAUGCGGUCAUCUGGGGGAUUCCCGAGGAUUCCC .((((((((((((((((((((((....----------..)--))((....))....))).))).)).)))))))))))(((....)))((((((((....)))))))) ( -40.90) >DroYak_CAF1 319 96 + 1 UCGUCCUGCCCGCCUCGGCAUCCGAAU----------CGG--GAACAGAAAUACCAUGCAUGAUGGCCGGACAGGAUGCGGUCAUCUGGGGGAUUCCCGAGGAUUCCC .(((((((((.((((((((((((....----------..)--))..(....)....))).))).))).)).)))))))(((....)))((((((((....)))))))) ( -34.20) >DroAna_CAF1 5926 96 + 1 UCGUCCUGCCCGCCUCUGCAUCCACAUUCGCGGUGGUCGGUGGCAGGGAUGUGCCAUGCAUGAUGGCUGGGCAGGAUGCCGUCACCUGG------------GAAUCCU .((((((((((((((((((..((((.......))))...((((((......))))))))).)).))).))))))))))(((.....)))------------....... ( -42.50) >consensus UCGUCCUGCCCGCCUCGGCAUCCGAAU__________CGG__GAACAGAUGUACCAUGCAUGAUGGCCGGGCAGGAUGCGGUCAUCUGGGGGAUUCCAGAGGAUUCCC .(((((((((((((((((((((((.............)))...............)))).))).))).))))))))))(((....)))((((((((....)))))))) (-31.25 = -33.05 + 1.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:32 2006