Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,638,669 – 1,638,784 |
Length | 115 |
Max. P | 0.696557 |
Location | 1,638,669 – 1,638,784 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 96.38 |
Mean single sequence MFE | -33.58 |
Consensus MFE | -30.71 |
Energy contribution | -30.53 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.04 |
Mean z-score | -1.70 |
Structure conservation index | 0.91 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.696557 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1638669 115 - 20766785 AAAUCAAACAUCAGCAACGUGACACACAGACAUAAGACGCCCGUCUAGUCGUGGUCUGUGGAACGCUAGCUCCGCUUUGCCAGGAGCCGGAGACUUUUUCCGCAUCCACAAUAUU ....................(((.(((.(((...((((....)))).)))))))))((((((..((..(((((.........))))).(((((...))))))).))))))..... ( -33.70) >DroSec_CAF1 24449 115 - 1 AAAUCAAACAUCAGCAACGUGACACACAGACAUAAGACGCCCGUCUAGUCGUGGUCUGUGGAACGCCAGCUCCGCUUUGCCAGGAGCCGGAGACUUUUUCCGCUUCCACAAUAUU ....................(((.(((.(((...((((....)))).)))))))))(((((((.((..(((((.........))))).(((((...))))))))))))))..... ( -35.50) >DroSim_CAF1 22879 114 - 1 AAAUCAAACAUCAGCAACGUGACACACAGACAUAAGACGCCCGUCUAGUCGUGGUCUGUGGAACGCCAGCUCCGCUUUGCCAGGAGCCGGAGACUU-UUCCGCUUCCAAAAUAUU .............((((...(((.(((.(((...((((....)))).))))))))).(((((.(....).))))).))))..((((.(((((....-))))).))))........ ( -32.30) >DroEre_CAF1 27127 115 - 1 AAAUCAAACAUCAGCAACGUGACACACAGACAUCAGACGCCCGUCUAGUCGUCGUCUGUGGAACGCCAGCUCCGCUCUGCCAGGAGCGGGAGACUUUUUCCGCAUCCACAAUAUU .............((..(((..((((..(((..(((((....)))).)..)))...))))..)))..(((((((((((....))))).)))).))......))............ ( -32.80) >consensus AAAUCAAACAUCAGCAACGUGACACACAGACAUAAGACGCCCGUCUAGUCGUGGUCUGUGGAACGCCAGCUCCGCUUUGCCAGGAGCCGGAGACUUUUUCCGCAUCCACAAUAUU .............((...(((...(((((((....(((.........)))...)))))))...))).(((((((((((....))))).)))).))......))............ (-30.71 = -30.53 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:41 2006