Locus 2537

Sequence ID 2R_DroMel_CAF1
Location 9,027,679 – 9,027,777
Length 98
Max. P 0.937665
window4176

overview

Window 6

Location 9,027,679 – 9,027,777
Length 98
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 78.65
Mean single sequence MFE -36.05
Consensus MFE -22.55
Energy contribution -21.22
Covariance contribution -1.33
Combinations/Pair 1.48
Mean z-score -2.22
Structure conservation index 0.63
SVM decision value 1.26
SVM RNA-class probability 0.937665
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9027679 98 - 20766785
AGGCAGUUGCUGCUGUCUAAUCCGUUGCUUGGCCUGCGCUUGAA---GUUGCUGGUGCUUGGACUGCUGCUGGGGACCCAUCUGCUUAAAGCGGUGCUGUU
.((((((.((((((((((((.((((.(((((((....)))..))---)).)).))...)))))).((.(.(((....))).).))....)))))))))))) ( -30.90)
>DroPse_CAF1 3896 98 - 1
UUGCAGCUGCUGCUGUCGUAUCCUCUGCUUGGCCUGGGCCUGCAAGGCUUGCAAAUUUUUUGCCUGUUGCUGUGGAGUAAUUUG---UAAGCGAUGCUGUU
..(((((....))))).(((((((.(((..(((....))).)))))((((((((((((((..(........)..))).))))))---)))))))))).... ( -36.40)
>DroSec_CAF1 4012 98 - 1
AGGCAGUUGCUGCUGCCUAAUCUUUUGCUUGGCCUGCGCUUGGA---GUUGCUGGUGCUUGGACUGCUGCUGGGCACCCAUAUGCUUGAAGCGGUGCUGUU
(((((((....)))))))............(((...(((((.((---((....((((((..(.(....))..)))))).....)))).)))))..)))... ( -39.30)
>DroSim_CAF1 3366 98 - 1
AGGCAGUUGCUGCUGCCUAAUCUUUUGCUUGGCCUGCGCUUGGA---GUUGCUGGUGCUUGGACUGCUGCUGGGCACCCAUAUGCUUGAAGCGGUGCUGUU
(((((((....)))))))............(((...(((((.((---((....((((((..(.(....))..)))))).....)))).)))))..)))... ( -39.30)
>DroYak_CAF1 3983 98 - 1
AGGCAGCUGCUGCUGCCUAAUCCUUUGUUUAGCCUGCGCUUGAA---GUUGCUGGUGCUUUGACUGCUGCGGGGUACUUAUCUGCUUUAAACGAUGCUGUU
(((((((....)))))))...........((((...((.(((((---((....(((((((((.(....)))))))))).....))))))).))..)))).. ( -34.00)
>DroPer_CAF1 452 98 - 1
UUGCAGCUGCUGCUGUCGUAUCCUCUGCUUGGCCUGGGCCUGCAAGGCUUGCAAAUUUUUUGCCUGUUGCUGUGGAGUAAUUUG---UAAGCGAUGCUGUU
..(((((....))))).(((((((.(((..(((....))).)))))((((((((((((((..(........)..))).))))))---)))))))))).... ( -36.40)
>consensus
AGGCAGCUGCUGCUGCCUAAUCCUUUGCUUGGCCUGCGCUUGAA___GUUGCUGGUGCUUGGACUGCUGCUGGGGACCCAUAUGCUUUAAGCGAUGCUGUU
(((((((....))))))).......((((((((....))).............(((((((((.(....))))))))))..........)))))........ (-22.55 = -21.22 +  -1.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:25 2006