Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,026,956 – 9,027,047 |
Length | 91 |
Max. P | 0.850290 |
Location | 9,026,956 – 9,027,047 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 76.78 |
Mean single sequence MFE | -30.61 |
Consensus MFE | -16.90 |
Energy contribution | -16.90 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.43 |
Mean z-score | -1.94 |
Structure conservation index | 0.55 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.850290 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9026956 91 + 20766785 CACUGUGGUGCGGCCACCGGCUGCUACUGGUGUUCCUGCCACAUCUACUACAACAUCCGCAGCAGCAGCUUCACCUGCAGCCGCAUCGAAG ..((.(((((((((.....((((((.(.((((((.................)))))).).)))))).((.......)).))))))))).)) ( -32.03) >DroSec_CAF1 3289 91 + 1 CACUGUGGUGAGGCCACCGGUUGCUACUGGUGUUCCUGCCACAUCUUUUACAACAUCCGCAGCAGCAGCUCCAUCUGCAGCCGUAUCGAAG ...((((((..(..(((((((....)))))))..)..))))))...............((.((.((((......)))).)).))....... ( -29.60) >DroSim_CAF1 2646 91 + 1 CACUGUGGUGCGGCCACCGGUUGCUACUGGUGUUCCUGCCACAUCUUCUACAACAUCCGCAGCAGCAGCUCCAUCUGCAGCCGCAUCGAAG ..((.((((((((((((((((....)))))))...((((...................))))..((((......)))).))))))))).)) ( -31.81) >DroEre_CAF1 3316 91 + 1 CACUGUGGUGCGAUCUCCGGCUGCUAAAGGCGUCCCUGCCACAUCUACUAUAACAUCUGCAGCAGCAGCUCCAGCUGUAGCCGCAUCGAAG ..((.(((((((..((.((((((.....((((....))))................((((....))))...)))))).)).))))))).)) ( -27.80) >DroYak_CAF1 3267 91 + 1 CACUGUGGUACGGUCUCCAGCUGCUAAGAGCGCUCCUGCCACAGCUACUACAACAUCUGCAGCAGCAGCUCCAGCUGUAGCCGCAUCGAAG ..((.((((.(((.((.((((((....(((((((.((((...................)))).))).)))))))))).))))).)))).)) ( -30.71) >DroAna_CAF1 3134 85 + 1 CACCUUAUUGCGAUCACCGGCG------GGAGCAGCUUCGACCUCUACCAUAUCGGCUUCUCCUGCUGCUACUUCGGUAGCUGGAAGCAAG .......((((..(((..((((------((((.(((..(((...........)))))).))))))))(((((....))))))))..)))). ( -31.70) >consensus CACUGUGGUGCGGCCACCGGCUGCUACUGGUGUUCCUGCCACAUCUACUACAACAUCCGCAGCAGCAGCUCCAUCUGCAGCCGCAUCGAAG ..((.(((((((((.....(((((....(((......)))..................))))).((((......)))).))))))))).)) (-16.90 = -16.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:24 2006