| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,014,337 – 9,014,431 |
| Length | 94 |
| Max. P | 0.830157 |
| Location | 9,014,337 – 9,014,431 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 69.15 |
| Mean single sequence MFE | -20.84 |
| Consensus MFE | -6.71 |
| Energy contribution | -6.66 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.32 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.830157 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9014337 94 - 20766785 GC---UUGCCUAUUUUUAGC--GUUUCGCAAGAAAAAAAAGAUAUGAGAAUAGU------GGAGAUAAUAGAUAAAUAU--GUACGUUUC--AUACCAAAC--CAU-------AAGCC ((---(((((((((((((.(--.((((....)))).....)...))))))))).------)(((((.(((......)))--....)))))--.........--..)-------)))). ( -16.50) >DroSec_CAF1 12637 74 - 1 GC---UUGCCUAUUUUUAGC--GUUUCGCAAGAA---AAAGAUAUGAGAAUAGG------GGAGAUAAUAGA---------------------UACCAAAC--CAU-------AAGCC .(---((.((((((((((..--.((((....)))---)......))))))))))------.)))........---------------------........--...-------..... ( -19.30) >DroSim_CAF1 12601 74 - 1 GC---UUGCCUAUUUUUAGC--GUUUCGCAAGAA---AAAGAUAUGAGAAUAGG------GGAGAUAAUAGA---------------------UACCAAAC--CAU-------AAGCC .(---((.((((((((((..--.((((....)))---)......))))))))))------.)))........---------------------........--...-------..... ( -19.30) >DroEre_CAF1 12745 86 - 1 GC---UUGUUUAUUUUUAGCUUGUUUCGCAAGAA---ACAGAUAUGAGAAUAGG------GUAGAUAAUAGAUA------AAUACGUUUC-----CCAAAC--CGU-------AAGCC ((---(((..((((((((..(((((((....)))---))))...))))))))((------(.((((........------.....)))))-----))....--..)-------)))). ( -21.92) >DroYak_CAF1 13021 97 - 1 GC---UUGUUUAUUUUUAGC--GUUUCGCAAGAA---ACAGAUAUGAGAAUAGA------GGAGAUAAUAGAUAAACAUAAAUACGUUUC-----CCAAAC--CGUAAGCCGUAAGCC ((---(((((((((((((.(--(((((....)))---)).)...))))))))))------((((((...................)))))-----).....--..)))))........ ( -20.31) >DroAna_CAF1 11553 96 - 1 GCCGCCUGUUUAUUUUUAGA--GGGGAACCUCUA---UGAGAUAUGAGAAUAGUUCAGAGAGAGAUAAUGGA----------AGUGUUUCUCCUUCCAGGGCACAU-------AAGCC ...((((..(((((((((((--((....))))).---((((.(((....))).))))...))))))))((((----------((........))))))))))....-------..... ( -27.70) >consensus GC___UUGCCUAUUUUUAGC__GUUUCGCAAGAA___AAAGAUAUGAGAAUAGG______GGAGAUAAUAGA__________UACGUUUC___UACCAAAC__CAU_______AAGCC ........((((((((((......(((....)))..........))))))))))................................................................ ( -6.71 = -6.66 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:23 2006