Locus 2534

Sequence ID 2R_DroMel_CAF1
Location 9,012,504 – 9,012,594
Length 90
Max. P 0.646126
window4173

overview

Window 3

Location 9,012,504 – 9,012,594
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 94.54
Mean single sequence MFE -15.51
Consensus MFE -12.08
Energy contribution -12.64
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -1.77
Structure conservation index 0.78
SVM decision value 0.23
SVM RNA-class probability 0.646126
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9012504 90 + 20766785
AAAACUCCGAUCAAAUGCCUUUUUCUUCGGCCGCAGCUAUAAAUACACAAAUAAAUUUACAUAUCUAGUUUAAAGUGUCACUCAGUUGCU
......((((..(((......)))..))))..((((((......((((...((((((.........))))))..)))).....)))))). ( -15.10)
>DroSec_CAF1 10862 90 + 1
AAAACUCCGAUCAAAUGCCUUUUUCUUCGGCCGCAGCUAUACAUACACAAAUAAAUUUACAUAUCUAGUUUAAAGUGUCACUCAGUUGCU
......((((..(((......)))..))))..((((((......((((...((((((.........))))))..)))).....)))))). ( -15.10)
>DroSim_CAF1 10836 88 + 1
AAAACUCCGAUCAAAUGC-UUUUUCGUCGGCCGCAGCUAUACAUACACA-AUAAAUUUACAUAUCUAGUUUAAAGUGUCACUCAGUUGCU
......(((((.(((...-..))).)))))..((((((......((((.-.((((((.........))))))..)))).....)))))). ( -17.30)
>DroEre_CAF1 10853 89 + 1
AAAACUACGAUCGAAUGC-UUUUUAUUCGGCCGCAGCUAUACAUACACAAAUAUAUUUACAUAUCUAGUUUAAAGUGUCACUCAGUUGCU
........(..((((((.-....))))))..)((((((......((((..........................)))).....)))))). ( -14.17)
>DroYak_CAF1 11088 89 + 1
AAAACUGCGAUCGAAUGC-UUUUUAUUCGGCCGCACCUAUGCAUACACAAAUAAAUUUACAUAUCUAGUUUAAAGUGUCACUCAGUUGCU
..(((((((..((((((.-....))))))..)))..........((((...((((((.........))))))..)))).....))))... ( -15.90)
>consensus
AAAACUCCGAUCAAAUGC_UUUUUCUUCGGCCGCAGCUAUACAUACACAAAUAAAUUUACAUAUCUAGUUUAAAGUGUCACUCAGUUGCU
......((((..(((......)))..))))..((((((......((((...((((((.........))))))..)))).....)))))). (-12.08 = -12.64 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:22 2006