Locus 2533

Sequence ID 2R_DroMel_CAF1
Location 9,002,097 – 9,002,203
Length 106
Max. P 0.883276
window4172

overview

Window 2

Location 9,002,097 – 9,002,203
Length 106
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 79.94
Mean single sequence MFE -43.15
Consensus MFE -32.68
Energy contribution -31.77
Covariance contribution -0.91
Combinations/Pair 1.45
Mean z-score -1.81
Structure conservation index 0.76
SVM decision value 0.93
SVM RNA-class probability 0.883276
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9002097 106 - 20766785
GCGAUGCUUGGUUAGCAUGUAGGAGUCGGCGAGCCGCUGCGUCAAGUACAUCUCGCACGACUCCUGCAUGGCCAAUAGGGCGCCUUCGGUGACCCUUAGCGGCUCG
.(((.(((((((...((((((((((((((((((..(.(((.....))))..))))).)))))))))))))))))..((((((((...)))).))))....)))))) ( -50.90)
>DroVir_CAF1 512 105 - 1
GCGAUACUGAGUAAGUAAAUAGGCAUCCUGGAAGCGCUGGGUUAAGUACAUUUCUGUCGCGGUCUGUAUAGCCUCCAGGGCGCUCAUAGUUAUCAUAAAGGGCGU-
((..((((.....)))).((..((..((((((.(((.((((...........)))).)))(((.......)))))))))..))..))..............))..- ( -25.50)
>DroSec_CAF1 501 106 - 1
GCGAUGCUUGGUUAGCAUGUAGGAGUCCGCGAGCCGCUGCGUCAAGUACAUUUCGCAGGACUCUUGCAUGGCCAUUAGGGCGCCCUCGGUGACCCUCAGCGGCUCG
.(((.(((((((...((((((((((((((((((..(.(((.....))))..))))).)))))))))))))))))..((((((((...)))).))))....)))))) ( -45.90)
>DroSim_CAF1 501 106 - 1
GCGAUGCUUGGUUAGCAUGUAGGAGUCCGCGAGCCGCUGCGUCAAGUACAUUUCGCAGGACUCUUGCAUGGCUAAUAGGGCGCCCUCGGUGACCCUCAGCGGCUCG
.(((.(((..(((((((((((((((((((((((..(.(((.....))))..))))).)))))))))))).))))))((((((((...)))).))))....)))))) ( -47.30)
>DroEre_CAF1 489 106 - 1
GCGAUGCCGGGUUAGCAUGUAGGAGUCCGACAGCCGCUGCGUCACGUACAUCUCGCAGGACUCCUGCAUGGCCAUAAAGGCGCCCUCGGAGACCCUCAACGGCUCU
..((.(((((((...((((((((((((((((.((....))))).((.......))..)))))))))))))(((.....)))))))..(....).......))))). ( -45.50)
>DroYak_CAF1 513 106 - 1
GCGAUGCUUGGUUAGCAUGUAGGAGUCCUCGAGCCGCUGCGUCAAGAACAUCUCGCAGGACUCCUGCAUGGCAAUUAAGGCGCCCUCGGUGACCCUCAACGGUGCU
......(((((((..((((((((((((((((((...((......)).....)))).))))))))))))))..)))))))(((((...((....)).....))))). ( -43.80)
>consensus
GCGAUGCUUGGUUAGCAUGUAGGAGUCCGCGAGCCGCUGCGUCAAGUACAUCUCGCAGGACUCCUGCAUGGCCAUUAGGGCGCCCUCGGUGACCCUCAACGGCUCG
((.......(((((.((((((((((((((((((..(((......)))....))))).)))))))))))))(((.....)))........))))).......))... (-32.68 = -31.77 +  -0.91)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:21 2006