Locus 2532

Sequence ID 2R_DroMel_CAF1
Location 9,001,038 – 9,001,130
Length 92
Max. P 0.819897
window4171

overview

Window 1

Location 9,001,038 – 9,001,130
Length 92
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 73.01
Mean single sequence MFE -20.43
Consensus MFE -12.32
Energy contribution -12.27
Covariance contribution -0.05
Combinations/Pair 1.30
Mean z-score -1.51
Structure conservation index 0.60
SVM decision value 0.68
SVM RNA-class probability 0.819897
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9001038 92 - 20766785
UCGAGCAGAAGGAUGCCAAAGUGCUGGUGUCCGUAAGUA--GUGCAAAAACCUUUU-UGGAUUACAAUAAAUUCGUUAUUUAUAAUCAAAUUGUU-
...(((((..((((((((......))))))))....(((--((.(((((....)))-)).))))).((((((.....)))))).......)))))- ( -21.90)
>DroSec_CAF1 31369 92 - 1
UCGAGCAGAAGGACGCCAAAGUGUUGGUGUCCGUAAGUG--GUCCAAAAACCUCUU-CGGAUUACAAUAAAUUCGUAAUUUAUAAGCAAAUUGUU-
....((....(((((((((....)))))))))....(((--((((.((......))-.))))))).((((((.....))))))..))........- ( -25.00)
>DroSim_CAF1 33023 92 - 1
UCGAGCAGAAGGACGCCAAAGUGCUGGUGUCCGUAAGUG--GUCGAAAAACCUCUU-CGGAUUACAAUAAAUUCGUUAUUUAUAAGCAAAUUGUU-
....((....((((((((......))))))))(((((((--(.((((.....((..-..))..........))))))))))))..))........- ( -23.56)
>DroEre_CAF1 32048 79 - 1
UCGAGCACAAGGACGCCAAAGUGCUGGUGUCCGUAAGUG--GACCAAUAACCCCUUUUGGAUU--------UAUGCUAU---AA--UCAAAUGU--
...(((....((((((((......))))))))....(((--((((((.........)))).))--------))))))..---..--........-- ( -21.50)
>DroYak_CAF1 35403 93 - 1
UCGAGCAGAAGGACGCUAAAGUGCUGGUGUCCGUAAGUG--GACCAAUAACCUCUU-GGGAUUACGAUAGAUAUGUUAUUUAAAUUUAAAAUGUUC
..(((((...((((((((......))))))))((((...--..((((.......))-))..))))..........................))))) ( -20.70)
>DroAna_CAF1 28478 75 - 1
UCGAACAAAAGGAUGCCAAAGUUUUGGUCACCGUAGGUUUUAUUCCACAACCACUU-------ACA---AAU----UAUU------AAAAUACUU-
..........((.((((((....)))).))))((((((..............))))-------)).---...----....------.........- (  -9.94)
>consensus
UCGAGCAGAAGGACGCCAAAGUGCUGGUGUCCGUAAGUG__GUCCAAAAACCUCUU_CGGAUUACAAUAAAUUCGUUAUUUAUAA_CAAAUUGUU_
....((....((((((((......))))))))....)).......................................................... (-12.32 = -12.27 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:20 2006