Locus 2531

Sequence ID 2R_DroMel_CAF1
Location 8,999,066 – 8,999,169
Length 103
Max. P 0.705445
window4170

overview

Window 0

Location 8,999,066 – 8,999,169
Length 103
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 93.20
Mean single sequence MFE -33.32
Consensus MFE -27.50
Energy contribution -27.06
Covariance contribution -0.44
Combinations/Pair 1.24
Mean z-score -1.46
Structure conservation index 0.83
SVM decision value 0.36
SVM RNA-class probability 0.705445
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8999066 103 - 20766785
AGGUGCAGCCAUACUGACGGCUGCGUACGUCGCCUCAGUGCGGUCACACUGUUCGAAAGAGCGAGACGAAAAACACGGCAACACGGCGGACGGAAAACUCAGU
.((((..(((.((((((.(((.((....)).))))))))).)))..))))((((....))))(((...........(....).((.....)).....)))... ( -35.40)
>DroSec_CAF1 29422 103 - 1
AGGGACAGCCAUACUGGAGGCUGCAUACGUCGCCUCAGUGCGGUCACACUGUUCGAAAGAGCGAGACGAAAAACACGGCAACACGGCGAACGGAAAACUCAGU
.(((.(((((........)))))....(((((((...(((...((....(((((....)))))....))....)))(....)..)))).))).....)))... ( -32.30)
>DroSim_CAF1 31090 103 - 1
AGGCACAGCCAUACUGACGGCAGGGUACGUCGCCUCAGUGCGGUCACACUGUUCGAAAGAGCGAGACGAAAAACACGGCAACACGGCGAACGGAAAACUCAGU
.......(((........))).((((.(((((((...(((...((....(((((....)))))....))....)))(....)..)))).)))....))))... ( -29.60)
>DroEre_CAF1 30108 103 - 1
AGGUGCAGCCAUACUGAGGGCAGCGCACGUCGCCUCAGUGCGGUCACACUGUUCAAAAGAGCGAGACGAAAAACACGGCAACACGGUGAACGGAAGACUCAGU
.((((..(((.((((((((.(.((....)).))))))))).)))..))))((((....))))(((........(((.(.....).)))..(....).)))... ( -33.40)
>DroYak_CAF1 33341 103 - 1
AGGCGCAGUCAUACUGAGGGCAGCGCACGUCGUCUCAGUGCGGUCACACUGUUCGAAAGAGCGAGACGAAAAACACGGCAACACGGCGAACGGAAAACUCAGU
.(((...)))..((((((..(..(((.(((((((((((((......))))((((....))))))))))).......(....).)))))....)....)))))) ( -35.90)
>consensus
AGGCGCAGCCAUACUGACGGCAGCGUACGUCGCCUCAGUGCGGUCACACUGUUCGAAAGAGCGAGACGAAAAACACGGCAACACGGCGAACGGAAAACUCAGU
..((((.(((........))).)))).(((((((...(((...((....(((((....)))))....))....)))(....)..))))).))........... (-27.50 = -27.06 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:19 2006