Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,636,388 – 1,636,557 |
Length | 169 |
Max. P | 0.972362 |
Location | 1,636,388 – 1,636,482 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 85.59 |
Mean single sequence MFE | -28.27 |
Consensus MFE | -20.74 |
Energy contribution | -20.55 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.05 |
Mean z-score | -1.98 |
Structure conservation index | 0.73 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.838261 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1636388 94 - 20766785 GGAACGGGAA---------UGGCAGAAAUGGCAAACAGGUGCCAUUGUAUGUGCUCUUGUAUCAAUUGCAUUGAGUGCCUUAUCUUGUCAGCCUUUUCUAGCU ((((.(((..---------((((((((((((((......)))))))....(..(((.((((.....))))..)))..)....)).))))).))).)))).... ( -29.30) >DroSec_CAF1 22185 93 - 1 GGAACGGG-A---------UGGCAGAAAUGGCAAACAGGUGCCAUUGUAUGUGCUCUUGUAUCAAUUGCAUUGAGUGCCUUAUCUUGUCAGCCUUUUCUAGAU ((((.(((-.---------((((((((((((((......)))))))....(..(((.((((.....))))..)))..)....)).))))).))).)))).... ( -30.70) >DroSim_CAF1 20614 93 - 1 GGAACGGG-A---------UGGCAGAAAUGGCAAACAGGUGCCAUUGUAUGUGCUCUUGUAUCAAUUGCAUUGAGUGCCUUAUCUUGUCAGCCUUUUCUAGAU ((((.(((-.---------((((((((((((((......)))))))....(..(((.((((.....))))..)))..)....)).))))).))).)))).... ( -30.70) >DroEre_CAF1 24712 91 - 1 GGAGCGGGAACGGCAAAAGCGGCAAAAAUGGCAAACAGGUGCCAUUG------------UAUCAAAUGCAUUGAGUGCCUUAUCUAGUCAGCCUUUUCUAGAU ((((.(((.((.((....))((((..(((((((......))))))).------------..((((.....)))).)))).......))...))).)))).... ( -22.40) >consensus GGAACGGG_A_________UGGCAGAAAUGGCAAACAGGUGCCAUUGUAUGUGCUCUUGUAUCAAUUGCAUUGAGUGCCUUAUCUUGUCAGCCUUUUCUAGAU ((((.(((............((((..(((((((......)))))))...............((((.....)))).))))............))).)))).... (-20.74 = -20.55 + -0.19)
Location | 1,636,414 – 1,636,518 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 83.54 |
Mean single sequence MFE | -32.10 |
Consensus MFE | -19.79 |
Energy contribution | -20.35 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -2.66 |
Structure conservation index | 0.62 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.921873 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1636414 104 + 20766785 CACUCAAUGCAAUUGAUACAAGAGCACAUACAAUGGCACCUGUUUGCCAUUUCUGCCA---------UUCCCGUUCCCCAUUUCCAUCCAGGGGAUGAAGAACGGAG--UGGUGU .......(((..(((...)))..))).....(((((((......)))))))...((((---------((((.((((..(((..((.....))..)))..))))))))--)))).. ( -34.90) >DroSec_CAF1 22211 103 + 1 CACUCAAUGCAAUUGAUACAAGAGCACAUACAAUGGCACCUGUUUGCCAUUUCUGCCA---------U-CCCGUUCCCCAUUUCCAUCCAAGGGAUGAAGAACGGGG--UGGUGC .......(((..(((...)))..))).....(((((((......)))))))...((((---------(-(((((((..(((..(.......)..)))..))))))))--)))).. ( -36.40) >DroSim_CAF1 20640 103 + 1 CACUCAAUGCAAUUGAUACAAGAGCACAUACAAUGGCACCUGUUUGCCAUUUCUGCCA---------U-CCCGUUCCCCAUUUCCACCCAAGGGAUGAAGAACGGAG--UGGUGC .......(((..(((...)))..))).....(((((((......)))))))...((((---------.-.((((((..(((..(.......)..)))..))))))..--)))).. ( -30.80) >DroEre_CAF1 24738 102 + 1 CACUCAAUGCAUUUGAUA------------CAAUGGCACCUGUUUGCCAUUUUUGCCGCUUUUGCCGUUCCCGCUCCCCAUUUUCAUCCA-GGGUUGAAAAACGGAGUGUGGUGC ...((((.....))))..------------.(((((((......)))))))......((....)).((.((((((((...((((((.(..-..).))))))..)))))).)).)) ( -26.30) >consensus CACUCAAUGCAAUUGAUACAAGAGCACAUACAAUGGCACCUGUUUGCCAUUUCUGCCA_________U_CCCGUUCCCCAUUUCCAUCCAAGGGAUGAAGAACGGAG__UGGUGC (((.((.........................(((((((......)))))))...................((((((..((((((.......))))))..))))))....))))). (-19.79 = -20.35 + 0.56)
Location | 1,636,414 – 1,636,518 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 83.54 |
Mean single sequence MFE | -35.65 |
Consensus MFE | -27.08 |
Energy contribution | -27.82 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.10 |
Mean z-score | -2.45 |
Structure conservation index | 0.76 |
SVM decision value | 1.69 |
SVM RNA-class probability | 0.972362 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1636414 104 - 20766785 ACACCA--CUCCGUUCUUCAUCCCCUGGAUGGAAAUGGGGAACGGGAA---------UGGCAGAAAUGGCAAACAGGUGCCAUUGUAUGUGCUCUUGUAUCAAUUGCAUUGAGUG ......--.((((((((((((..((.....))..))))))))))))..---------..(((..(((((((......)))))))...)))((((.((((.....))))..)))). ( -36.70) >DroSec_CAF1 22211 103 - 1 GCACCA--CCCCGUUCUUCAUCCCUUGGAUGGAAAUGGGGAACGGG-A---------UGGCAGAAAUGGCAAACAGGUGCCAUUGUAUGUGCUCUUGUAUCAAUUGCAUUGAGUG (((((.--.((((((((((((.((......))..))))))))))))-.---------((.((....)).))....)))))..........((((.((((.....))))..)))). ( -40.00) >DroSim_CAF1 20640 103 - 1 GCACCA--CUCCGUUCUUCAUCCCUUGGGUGGAAAUGGGGAACGGG-A---------UGGCAGAAAUGGCAAACAGGUGCCAUUGUAUGUGCUCUUGUAUCAAUUGCAUUGAGUG ...(((--..(((((((((((.((......))..))))))))))).-.---------)))((..(((((((......)))))))...)).((((.((((.....))))..)))). ( -38.20) >DroEre_CAF1 24738 102 - 1 GCACCACACUCCGUUUUUCAACCC-UGGAUGAAAAUGGGGAGCGGGAACGGCAAAAGCGGCAAAAAUGGCAAACAGGUGCCAUUG------------UAUCAAAUGCAUUGAGUG ......(((((((((((((..(((-((........)))))..((....))).)))))))(((..(((((((......))))))).------------.......)))...))))) ( -27.70) >consensus GCACCA__CUCCGUUCUUCAUCCCUUGGAUGGAAAUGGGGAACGGG_A_________UGGCAGAAAUGGCAAACAGGUGCCAUUGUAUGUGCUCUUGUAUCAAUUGCAUUGAGUG (((((...(((((((.(((((((...))))))))))))))...))..............(((..(((((((......)))))))...)))..............)))........ (-27.08 = -27.82 + 0.75)
Location | 1,636,451 – 1,636,557 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 87.43 |
Mean single sequence MFE | -36.15 |
Consensus MFE | -27.66 |
Energy contribution | -27.48 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.13 |
Mean z-score | -1.79 |
Structure conservation index | 0.77 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.767086 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1636451 106 - 20766785 CGAUACUAAUGGGUGCAGACCAGUGGGUCACGAGACAGAACACCA--CUCCGUUCUUCAUCCCCUGGAUGGAAAUGGGGAACGGGAA---------UGGCAGAAAUGGCAAACAGGU .........((..(((...(((((((.((........))...)))--)((((((((((((..((.....))..))))))))))))..---------)))((....)))))..))... ( -34.60) >DroSec_CAF1 22248 105 - 1 CGAUACUGAUGGGUGCAGACCAGUGGGUCACGAGACAGAGCACCA--CCCCGUUCUUCAUCCCUUGGAUGGAAAUGGGGAACGGG-A---------UGGCAGAAAUGGCAAACAGGU .....(((...(((((.((((....)))).(......).))))).--.((((((((((((.((......))..))))))))))))-.---------((.((....)).))..))).. ( -41.00) >DroSim_CAF1 20677 105 - 1 CGAUACUGAUGGGUGCAGACCAGUGGGUCACGAGACAGAGCACCA--CUCCGUUCUUCAUCCCUUGGGUGGAAAUGGGGAACGGG-A---------UGGCAGAAAUGGCAAACAGGU .....(((...(((((.((((....)))).(......).))))).--.((((((((((((.((......))..))))))))))))-.---------((.((....)).))..))).. ( -38.20) >DroEre_CAF1 24763 116 - 1 CCAUACUGAUGGGUACAAACCAGUGGGUCAGGAGACAGAGCACCACACUCCGUUUUUCAACCC-UGGAUGAAAAUGGGGAGCGGGAACGGCAAAAGCGGCAAAAAUGGCAAACAGGU ((((....))))......(((.((..(((((....)...((.((.(.(((((((((.((.(..-..).))))))))))).).)).....((....)).)).....))))..)).))) ( -30.80) >consensus CGAUACUGAUGGGUGCAGACCAGUGGGUCACGAGACAGAGCACCA__CUCCGUUCUUCAUCCCUUGGAUGGAAAUGGGGAACGGG_A_________UGGCAGAAAUGGCAAACAGGU .........((..(((...((.((..(((....)))...)).((...(((((((.(((((((...))))))))))))))...)).............))((....)))))..))... (-27.66 = -27.48 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:40 2006