Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,996,265 – 8,996,399 |
Length | 134 |
Max. P | 0.942071 |
Location | 8,996,265 – 8,996,359 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 90.21 |
Mean single sequence MFE | -20.66 |
Consensus MFE | -18.06 |
Energy contribution | -17.75 |
Covariance contribution | -0.31 |
Combinations/Pair | 1.16 |
Mean z-score | -1.58 |
Structure conservation index | 0.87 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.753497 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8996265 94 + 20766785 CCCCAUGCAUGCUGGAGUACUCGCAAUUCCGGACUCCGAAAA-AACUUCGGAUUGCAACUGAAGGAGAGAGCCGGAAAAAAAAA-AUAAAAAAACG ..((.((((..(((((((.......)))))))..((((((..-...)))))).))))......((......)))).........-........... ( -20.70) >DroSec_CAF1 26598 94 + 1 CUCCAUGCAUGCUGGAGUACUCGCAAUUCCGGACUCCGAAAAAGACUCCGGAUUGCAACUGAAGGAGAGAGCCGGAAAAUAAAA--AAAAUAAACG (((((.(....))))))..((((((((.(((((.((.......)).))))))))))..((.....)).))).............--.......... ( -22.40) >DroSim_CAF1 26847 96 + 1 CUCCAUGCAUGCUGGAGUACUCGCAAUUCCGGACUCCGAAAAAAACUCCGGAUUGCAACUGAAGGAGAGAGCCGGAAAAUAAAAAAAAAAUAAACG (((((.(....)))))).........((((((.(((.........((((..............)))).)))))))))................... ( -20.24) >DroYak_CAF1 27619 91 + 1 CGCCAUGCAUGCUGGAGUACUCGCAAUUCCGGACUCCAAA--AAACUCCGGAUUGCAACUGAAGGAGAGAGUCACAAAAAGAA---AAAAAAAACG ..(((.(....)))).(((((((((((.(((((.......--....))))))))))..((.....)).)))).))........---.......... ( -19.30) >consensus CUCCAUGCAUGCUGGAGUACUCGCAAUUCCGGACUCCGAAAAAAACUCCGGAUUGCAACUGAAGGAGAGAGCCGGAAAAAAAAA__AAAAAAAACG ...........((((..(.((((((((.(((((.............))))))))))..(....)))).)..))))..................... (-18.06 = -17.75 + -0.31)
Location | 8,996,292 – 8,996,399 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 91.69 |
Mean single sequence MFE | -23.92 |
Consensus MFE | -21.60 |
Energy contribution | -21.23 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.11 |
Mean z-score | -1.98 |
Structure conservation index | 0.90 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.942071 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8996292 107 + 20766785 UCCGGACUCCGAAAA-AACUUCGGAUUGCAACUGAAGGAGAGAGCCGGAAAAAAAAA-AUAAAAAAACGAAGAAUCCGAAGGCUUAUCUUUCAGCCAAACACUCGAGCG ...((..((((((..-...))))))......((((((((..((((((((........-................)))...))))).))))))))))............. ( -24.96) >DroSec_CAF1 26625 107 + 1 UCCGGACUCCGAAAAAGACUCCGGAUUGCAACUGAAGGAGAGAGCCGGAAAAUAAAA--AAAAUAAACGAAGAAUCCGAAGGCUUAUCUUUCAGCCAAACACUCGAGCG ((((((.((.......)).))))))......((((((((..((((((((........--...............)))...))))).))))))))............... ( -26.20) >DroSim_CAF1 26874 109 + 1 UCCGGACUCCGAAAAAAACUCCGGAUUGCAACUGAAGGAGAGAGCCGGAAAAUAAAAAAAAAAUAAACGAAGAAUCCGAAGGCUUAUCUUUCAGCCAAACACUCGAGCG ((((((.............))))))......((((((((..((((((((.........................)))...))))).))))))))............... ( -23.73) >DroYak_CAF1 27646 104 + 1 UCCGGACUCCAAA--AAACUCCGGAUUGCAACUGAAGGAGAGAGUCACAAAAAGAA---AAAAAAAACGAAGGAUCCGAAGGCUUAUCUUUCAGCCAAACACUCGAGCG ((((((.......--....))))))......((((((((..(((((.(.....)..---........(....).......))))).))))))))............... ( -20.80) >consensus UCCGGACUCCGAAAAAAACUCCGGAUUGCAACUGAAGGAGAGAGCCGGAAAAAAAAA__AAAAAAAACGAAGAAUCCGAAGGCUUAUCUUUCAGCCAAACACUCGAGCG ((((((.............))))))......((((((((..(((((..................................))))).))))))))............... (-21.60 = -21.23 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:16 2006