Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,995,659 – 8,995,756 |
Length | 97 |
Max. P | 0.861250 |
Location | 8,995,659 – 8,995,756 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 80.35 |
Mean single sequence MFE | -34.20 |
Consensus MFE | -24.66 |
Energy contribution | -24.50 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -1.89 |
Structure conservation index | 0.72 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.861250 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8995659 97 + 20766785 ACAGUGAAAUGUCGAGUGUCCCGCGGGGACGCAAAGGAUGUCAGCCAGGAUGGCAGGAUGACUGG----------------CUGGCAGGAUGCCGUCAGUGGGCGGUGGAUGU .((.((...((.((.((((((.(((....)))......((((((((((.............))))----------------)))))))))))))).)).....)).))..... ( -39.32) >DroSec_CAF1 26022 81 + 1 ACAGUGAAAUGUCGAGUGUCCCGCGGGGACGCAAAGGAUGUCAGCCAGGAUGGCA--------------------------------GGAUGCCGUCAGUGGGCGGUGGAUGU ........(((((.(.((.(((((((.(((((....).))))..))..((((((.--------------------------------....)))))).))))))).).))))) ( -29.70) >DroSim_CAF1 25981 81 + 1 ACAGUGAAAUGUCGAGUGUCCCGCGGGGACGCAAAGGAUGUCAGCCAGGAUGGCA--------------------------------GGAUGCCGUCAGUGGGCGGUGGAUGU ........(((((.(.((.(((((((.(((((....).))))..))..((((((.--------------------------------....)))))).))))))).).))))) ( -29.70) >DroEre_CAF1 26446 113 + 1 ACAGUGAAAUGUCGAGUGUCCCGCGGGGACGCAAAGGAUGUCGGGCAGAAUGGCAGGAUGGCAGGAUGGCAGGAUUGCGGGAUGACUGGAUGCCGUCAGUGGGCGGUGGAUGU ..........(((.(((((((((((....)((......(((((.((......))....))))).....))......))))))).))).)))((((((....))))))...... ( -39.10) >DroYak_CAF1 26982 97 + 1 ACAGUGAAAUGUCGAGUGUCCCCGCGGGACGCAAAGGAUGUCAGGCAGGAUGGCAGGAUGGCAGG----------------AUGACUGGAUGCCGUCAGUGGGCGGUGGGUGU .((((.(..(((((.(((((((...)))))))......(((((.......)))))...)))))..----------------.).))))...((((((....))))))...... ( -33.20) >consensus ACAGUGAAAUGUCGAGUGUCCCGCGGGGACGCAAAGGAUGUCAGCCAGGAUGGCAGGAUG_C_GG_________________UG_C_GGAUGCCGUCAGUGGGCGGUGGAUGU ..........(((..(((((((...)))))))......(((((.......))))).................................)))((((((....))))))...... (-24.66 = -24.50 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:14 2006