Locus 2527

Sequence ID 2R_DroMel_CAF1
Location 8,992,459 – 8,992,557
Length 98
Max. P 0.999780
window4164

overview

Window 4

Location 8,992,459 – 8,992,557
Length 98
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 92.44
Mean single sequence MFE -40.43
Consensus MFE -36.95
Energy contribution -37.32
Covariance contribution 0.36
Combinations/Pair 1.14
Mean z-score -3.34
Structure conservation index 0.91
SVM decision value 4.06
SVM RNA-class probability 0.999780
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8992459 98 - 20766785
UA-AAUGUCUGGGCGUUCGUGCGUUGCCUGCAACGCAGCAGAGCAGCGCAUAAACAUGCACAUCGUUAAGAGACGAGACCGGGCUCAGAC----CCAGGCCCA
..-...(((((((((((..((((((((((((......)))).))))))))..)))..((...(((((....)))))......))...).)----))))))... ( -42.80)
>DroSec_CAF1 22861 98 - 1
UA-AAUGUCUGGGCGUUCGUGCGUUGCCUGCAACGCAGCAGAGCAGCGCAUAAACAUGCACAUCGUUAAGAGACGAGACCGGGCUCAGAC----CCAGGCCCA
..-...(((((((((((..((((((((((((......)))).))))))))..)))..((...(((((....)))))......))...).)----))))))... ( -42.80)
>DroSim_CAF1 22797 98 - 1
UA-AAUGUCUGGGCGUUCGUGCGUUGCCUGCAACGCAGCAGAGCAGCGCAUAAACAUGCACAUCGUUAAGAGACGAGACCGGGCUCAGAC----CCAGGCCCA
..-...(((((((((((..((((((((((((......)))).))))))))..)))..((...(((((....)))))......))...).)----))))))... ( -42.80)
>DroEre_CAF1 23132 98 - 1
UA-AAUGUCUGGGCGUUCGUGCGUUGCUUGCAACGCAGCAGAGCAGCGCAUAAACAUGCACAUCGUUAAGAGACGAGACCGGGCUCAGAC----CCAGGCCCA
..-...(((((((((((..((((((((((((......))).)))))))))..)))..((...(((((....)))))......))...).)----))))))... ( -40.40)
>DroYak_CAF1 23764 103 - 1
GAAAAUGUCUGGGCGUUCGUGCGUUGCCUGCAACGCAGCAGAGCAGCGCAUAAACAUGCACAUCGUUAAGAGACGAGACCGGGCUCAGACCAAACCAGGCCCA
......(((((((((((..((((((((((((......)))).))))))))..))).......(((((....)))))......))))))))............. ( -42.40)
>DroAna_CAF1 20123 97 - 1
UA-AAUGUCUGCGCGUUCGUGCGUUACUUGCAACGCAGCGAAGCAGCGCAUAAACAUGCACAUCGUUAAGACUCUGGCCAGAG-CCAGAC----CGAGGUCCA
..-((((..((((.(((..((((((.(((((......)).))).))))))..))).))))...))))..(((((((((....)-))))).----....))).. ( -31.40)
>consensus
UA_AAUGUCUGGGCGUUCGUGCGUUGCCUGCAACGCAGCAGAGCAGCGCAUAAACAUGCACAUCGUUAAGAGACGAGACCGGGCUCAGAC____CCAGGCCCA
......(((((((((((..((((((((((((......)))).))))))))..))).......(((((....)))))......))))))))............. (-36.95 = -37.32 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:13 2006