| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,991,811 – 8,991,902 |
| Length | 91 |
| Max. P | 0.525917 |
| Location | 8,991,811 – 8,991,902 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 85.89 |
| Mean single sequence MFE | -15.57 |
| Consensus MFE | -8.70 |
| Energy contribution | -8.54 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.64 |
| Structure conservation index | 0.56 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.525917 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8991811 91 + 20766785 AAA-AA---AAAGAGCAACAGGAAAAAUGCCAAAUAUAGAGAGGGUAUAAAAUAAUAAAAGCCAUAAAUAAACUUUAAAUUGGUUUUUUUC--CA-----AC ...-..---...........(((((((.(((((......((((..(((...................)))..))))...))))).))))))--).-----.. ( -14.91) >DroSec_CAF1 22192 88 + 1 ----AA---AAAGAGCAACAGGAAAAAUGCCAAAUAUAGAGAGGGUAUAAAAUAAUAAAAGCCAUAAAUAAACUUUAAAUUGGUUUUUUUC--CG-----CC ----..---...........(((((((.(((((......((((..(((...................)))..))))...))))).))))))--).-----.. ( -14.91) >DroEre_CAF1 22514 93 + 1 AAAAAA---GAAGAGCAACAGGAAAAAUGCCAAAUAUAG--AGGGUAUAAAAUAAUAAAAGCCAUAAAUAAACUUUAAAUUGGUUUUUUUC--CCCCU--CC ......---...(((.....(((((((.(((((...(((--((..(((...................)))..)))))..))))).))))))--)..))--). ( -16.61) >DroYak_CAF1 23088 94 + 1 AAAAAA------GAGCAACAGGAAAAAUGCCAAAUAUAG--AGGGUAUAAAAUAAUAAAAGCCAUAAAUAAACUUUAAAUUGGUUUUUUUUACCCCCUUGUC ......------(.(((..........)))).......(--((((..(((((.....(((((((................))))))))))))..)))))... ( -13.99) >DroAna_CAF1 19511 94 + 1 AAAAAAUGAUACAAGCCAGAGGAAAAAUGCCAAAUAUAG--AGGGUAUAAAAUAAUAAAAGCCAUAAAUAAACUUUAAAUUGGUUUUUUUC--UCU----CU .................((((((((((.(((((...(((--((..(((...................)))..)))))..))))).))))))--.))----)) ( -17.41) >consensus AAAAAA___AAAGAGCAACAGGAAAAAUGCCAAAUAUAG__AGGGUAUAAAAUAAUAAAAGCCAUAAAUAAACUUUAAAUUGGUUUUUUUC__CC_____CC .....................((((((.(((((..........(((..............))).((((.....))))..))))).))))))........... ( -8.70 = -8.54 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:12 2006