Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,990,288 – 8,990,402 |
Length | 114 |
Max. P | 0.719637 |
Location | 8,990,288 – 8,990,402 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 83.07 |
Mean single sequence MFE | -25.58 |
Consensus MFE | -18.60 |
Energy contribution | -20.38 |
Covariance contribution | 1.78 |
Combinations/Pair | 1.07 |
Mean z-score | -2.06 |
Structure conservation index | 0.73 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.719637 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8990288 114 - 20766785 UCGAGGUUGUGGUAUGUCAUGCCAUCUUAAUAAUGACAUUUAUUUGUAACGUGUUAAGAUACUAAAUUGCCCCGUCCACAACAUGCAACAAGCAACAUGCAGCACAUAACCAUA ....(((((((...((.((((..(((((((((...(((......)))....))))))))).......................(((.....))).))))))...)))))))... ( -27.30) >DroSec_CAF1 20721 107 - 1 UCGAGGUUGUGGUAUGUCAUGCCAUCUUAAUAAUGACAUUUAUUUGUAACGUGUUAAGAUACUAAAUUGCUCCGUCCACAACAUG-------CAACAUGCUGCACAUAACCAUA ....((((((((((.(.((((..(((((((((...(((......)))....)))))))))......((((...((.....))..)-------))))))))))).)))))))... ( -26.90) >DroSim_CAF1 20413 114 - 1 UCGAGGUUGUGGUAUGUCAUGCCAUCUUAAUAAUGACAUUUAUUUGUAACGUGUUAAGAUACUAAAUUGCCCCGUCCACAACAUGCAACAUGCAACAUGCUGCACAUAACCAUA ....(((((..((((((((((..(((((((((...(((......)))....)))))))))......((((...((.....))..))))))))..))))))..))....)))... ( -27.40) >DroEre_CAF1 20928 108 - 1 UCGAGGUUGUGGUAUGUCAUGCCAUCUUAAUAAUGACAUUUAUUUGUAACGUGUUAAGAUACUAAAUUGCCCCGUCCGU------CCACAUGCAACAUGCAGCACAUAACCAUA ....(((((((...((.((((..(((((((((...(((......)))....)))))))))......((((...((....------..))..))))))))))...)))))))... ( -26.60) >DroYak_CAF1 21552 104 - 1 UGGAGGUUGUGGUAUGUCAUGCCAUCUUAAUAAUGACAUUUAUUUGUAACGUGUUAAGAUACUAAAUUGCCCCG----U------CCACAUGCAACAUGCGGCACAUAACCAUA ....(((((((...((.((((..(((((((((...(((......)))....)))))))))......((((....----.------......))))))))))...)))))))... ( -25.50) >DroAna_CAF1 17576 91 - 1 ----UGCUGCGGCAUGACAUGCCAUCUUAAUAAUGACAUUUAUUUGUAACGUGUUAAGGUACUAAAUUGCCCCUG----------CCACAUGCAACACACAGGAG--------- ----(((((.(((((((((((.......(((((......))))).....))))))).((((......))))..))----------)).)).)))...........--------- ( -19.80) >consensus UCGAGGUUGUGGUAUGUCAUGCCAUCUUAAUAAUGACAUUUAUUUGUAACGUGUUAAGAUACUAAAUUGCCCCGUCCAC______CCACAUGCAACAUGCAGCACAUAACCAUA ....(((((((...((.((((..(((((((((...(((......)))....)))))))))......((((.....................))))))))))...)))))))... (-18.60 = -20.38 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:11 2006