Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,988,047 – 8,988,147 |
Length | 100 |
Max. P | 0.500000 |
Location | 8,988,047 – 8,988,147 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 81.73 |
Mean single sequence MFE | -31.90 |
Consensus MFE | -15.85 |
Energy contribution | -17.02 |
Covariance contribution | 1.17 |
Combinations/Pair | 1.00 |
Mean z-score | -2.43 |
Structure conservation index | 0.50 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8988047 100 + 20766785 CUUUGG-----GAUUUGGCCAUA-AAACGGCUUGUUGUGUGGCGAGUGCGACUGCCGCCUCGAGGCGUUUUGUGGGCACAGCCCAGAAAACAGAAGAAGAAGAAGA .(((((-----(...((.(((((-(((((.((((..(.(((((.((.....)))))))).)))).)))))))))).))...))))))................... ( -41.20) >DroSec_CAF1 18262 97 + 1 UUUUG------GAUUUGGCCAUA-AAACAGCUUGUUGUGUGGCGAGUGCGACUGCCGCCUCUAGGCGUUUUGUGGGCACAGCCCAGAAAACAGAAAGAAAA--AAA (((((------(.(.((.(((((-((((.(((((..(.(((((.((.....))))))))..)))))))))))))).)).)..)))))).............--... ( -33.90) >DroSim_CAF1 17872 99 + 1 UUUUG------GAUUUGGCCAUA-AAACAGCUUGUUGUGUGGCGAGUGCGACUGCCGCCUCGAGGCGUUUUGUGGGCACAGCCCAGAAAACAGAAAGAAAAAAAAA ..(((------.(((((.(((((-.(((.....))).)))))))))).)))((..((((....)))(((((.(((((...))))).))))).)..))......... ( -32.30) >DroEre_CAF1 18732 86 + 1 CUUUG------GAUUUAGCCAUA-AAACAGCUUGUUGUGUGGCGAGUGCGACUG---CCUCAAGGCGUUUUGUGAGCACAGCCCAGAAAAA--------AA--UAA .((((------(.....((((((-.(((.....))).))))))..((((.((((---((....))))....))..))))...)))))....--------..--... ( -25.50) >DroYak_CAF1 19279 86 + 1 CUUUG------GAUUUGGCCAUA-AAACAGCUUGUUGUGUGGCGAGUGCGACUG---CCUCGAGGCGUUUUGUAGGCACAGCCCAGAAAAA--------AA--CAA .((((------(..(((((((((-((((.(((((((....)))))))......(---((....)))))))))).))).))).)))))....--------..--... ( -27.00) >DroAna_CAF1 16154 98 + 1 CUUUGUUGGCUGUCUCGACCGUAAAAACAGCUUGUUGUGUGGCGAGUGCGACUG---CCUCGAGGCGUUUGCCGGGCACAGCCCAAAAAAAAAAU---CAA--CAA .((((..(((((((((((((((....((((....))))...))).))((((.((---((....)))).)))))))).))))))))))........---...--... ( -31.50) >consensus CUUUG______GAUUUGGCCAUA_AAACAGCUUGUUGUGUGGCGAGUGCGACUG___CCUCGAGGCGUUUUGUGGGCACAGCCCAGAAAAAAGAA____AA__AAA .................(((.........(((((((....))))))).(((........))).))).((((.(((((...))))).))))................ (-15.85 = -17.02 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:10 2006