Locus 2523

Sequence ID 2R_DroMel_CAF1
Location 8,981,322 – 8,981,412
Length 90
Max. P 0.596965
window4160

overview

Window 0

Location 8,981,322 – 8,981,412
Length 90
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 81.79
Mean single sequence MFE -18.70
Consensus MFE -10.98
Energy contribution -11.37
Covariance contribution 0.39
Combinations/Pair 1.06
Mean z-score -2.06
Structure conservation index 0.59
SVM decision value 0.13
SVM RNA-class probability 0.596965
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8981322 90 - 20766785
UCGACGGGUUCAUACGAUUUGUGGUUUGUUGAUUUUUCUCAUUCAACGCUCCAUCGCUUUCUUGC--UUGCCCGCCCAGCAAAAACCCAUUG
.....(((((..........((((..((((((..........))))))..)))).((......))--((((.......)))).))))).... ( -19.40)
>DroSec_CAF1 11632 87 - 1
UCGACGGGUUCAUACGAUUUGUGGCUUGUUGAUUUUUCUCAUUCAACGCUCCAUCGCUUUU-UGC--UUGCCUGCCCAGCAA--ACCCAUUC
.....(((((..........((((..((((((..........))))))..)))).(((...-.((--......))..))).)--)))).... ( -19.40)
>DroSim_CAF1 11230 90 - 1
UCGACGGGUUCAUACGAUUUGUGGUUUGUUGAUUUUUCUCAUUCAACGCUCCAUCGCUUUUUUGCUUUUGCCUGCCCAGCAA--ACCCAUUC
.....(((((..........((((..((((((..........))))))..)))).(((.....((....))......))).)--)))).... ( -19.90)
>DroEre_CAF1 11845 78 - 1
UCGCCGGGUUCAUACGAUUUGUGGUUUGUUGAUUUUUCUCAUUCAACGCUCCAUCGCUUUU-U----------GCCCACC-A--ACCCAUUC
.....(((((..........((((..((((((..........))))))..)))).((....-.----------)).....-)--)))).... ( -17.30)
>DroYak_CAF1 12325 78 - 1
UCGACGGGUUCAUACGAUUUGUGGUUUGUUGAUUUUUCCCAUUCAACGCUCCAUCGCUCUU-U----------GCCCACC-A--ACCCAUGC
.....(((((..........((((..((((((..........))))))..)))).((....-.----------)).....-)--)))).... ( -17.30)
>DroAna_CAF1 9935 75 - 1
UCGUACUCUACGUACGAUUUGUGGUUUGUUGAUUUUUCUCAUUCAACGCUCCAUCGCUUG--------------CCCCAU-G--CCACAUGC
((((((.....))))))..((((((..(((((..........)))))((......))...--------------......-)--)))))... ( -18.90)
>consensus
UCGACGGGUUCAUACGAUUUGUGGUUUGUUGAUUUUUCUCAUUCAACGCUCCAUCGCUUUU_U__________GCCCAGC_A__ACCCAUUC
.....((((((....))...((((..((((((..........))))))..))))..............................)))).... (-10.98 = -11.37 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:09 2006