Locus 2522

Sequence ID 2R_DroMel_CAF1
Location 8,979,686 – 8,979,780
Length 94
Max. P 0.935429
window4159

overview

Window 9

Location 8,979,686 – 8,979,780
Length 94
Sequences 3
Columns 94
Reading direction forward
Mean pairwise identity 97.14
Mean single sequence MFE -31.67
Consensus MFE -29.97
Energy contribution -30.30
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.38
Structure conservation index 0.95
SVM decision value 1.24
SVM RNA-class probability 0.935429
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8979686 94 + 20766785
ACAUGCCAGUUCCGCCCUAAUGGCCAACAAACUGAGCAACAGGAGGAGCACACUCGGCACACUGGAAACGAGACGAGAGGGAAUUGGAACUGUG
......(((((((.((((..(((((......(((.....)))(((.......))))))...(((....).)).))..))))....))))))).. ( -29.10)
>DroSec_CAF1 10038 92 + 1
ACAUGCCAGUUCCGCCCUAAUGGCCAACAAACUGAGCAACAGGAGGAGC--ACUCGGCACACUGGAAACGAGACGAGGGGGAAUUGGAACUGUG
(((..((((((((.((((..(((((......(((.....)))(((....--.)))))).))(((....).))...))))))))))))...))). ( -33.10)
>DroSim_CAF1 9627 92 + 1
ACAUGCCAGUUCCGCCCUAAUGGCCAACAAACUGAGCAACAGGAGGAGC--ACUCGGCACACGGGAAACGAGACGAGGGGGAAUUGGAACUGUG
(((..((((((((.((((..(((((......(((.....)))(((....--.)))))).))..(....)......))))))))))))...))). ( -32.80)
>consensus
ACAUGCCAGUUCCGCCCUAAUGGCCAACAAACUGAGCAACAGGAGGAGC__ACUCGGCACACUGGAAACGAGACGAGGGGGAAUUGGAACUGUG
(((..((((((((.((((..(((((......(((.....)))(((.......)))))).))..(....)......))))))))))))...))). (-29.97 = -30.30 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:08 2006