Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,635,353 – 1,635,443 |
Length | 90 |
Max. P | 0.845109 |
Location | 1,635,353 – 1,635,443 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 94.44 |
Mean single sequence MFE | -25.38 |
Consensus MFE | -25.86 |
Energy contribution | -25.43 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.16 |
Mean z-score | -1.55 |
Structure conservation index | 1.02 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.845109 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1635353 90 + 20766785 UUUAAUGCCUUGGCCGAAAAAGAUUUAUAGCAUUUCGCGAUAGACCGUUUUCGGCUUAUUGAGAGCACUUAACAGCAACAGGGCACGCGU .....(((((((((((((((.(.(((((.((.....)).))))).).)))))))).........((........))..)))))))..... ( -28.00) >DroSec_CAF1 21157 90 + 1 UUUAAUGCUUUGGCCGAAAAAGAUUUAUAGCAUUUCGCGAUAGACCGUUUUCGGCUUAUUGAGAGCACUUAACAGCAACAGGGCACGCGU .....(((((((((((((((.(.(((((.((.....)).))))).).)))))))).........((........))..)))))))..... ( -25.20) >DroSim_CAF1 19589 90 + 1 UUUAAUGCUUUGGCCGAAAAAGAUUUAUAGCAUUUCGCGAUAGACCGUUUUCGGCUUAUUGAGAGCACUUAACAGCAACAGGGCACGCGU .....(((((((((((((((.(.(((((.((.....)).))))).).)))))))).........((........))..)))))))..... ( -25.20) >DroEre_CAF1 23677 90 + 1 UUUAAUGCUAUGGCCGAAGAAGAUUUAUAGCAUUCCGCGAUGGCCCGCUUUCGGCUUAUUCAGAGCACUUAGCAGCAACAUGGCACGCGU .....((((((((((((((..(..((((.((.....)).))))..)..))))))).........((.....)).....)))))))..... ( -23.10) >consensus UUUAAUGCUUUGGCCGAAAAAGAUUUAUAGCAUUUCGCGAUAGACCGUUUUCGGCUUAUUGAGAGCACUUAACAGCAACAGGGCACGCGU .....(((((((((((((((.(.(((((.((.....)).))))).).)))))))).........((........))..)))))))..... (-25.86 = -25.43 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:36 2006