Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,968,674 – 8,968,770 |
Length | 96 |
Max. P | 0.505541 |
Location | 8,968,674 – 8,968,770 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 84.26 |
Mean single sequence MFE | -22.08 |
Consensus MFE | -16.43 |
Energy contribution | -15.22 |
Covariance contribution | -1.21 |
Combinations/Pair | 1.48 |
Mean z-score | -1.68 |
Structure conservation index | 0.74 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.505541 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8968674 96 - 20766785 UCUGCGCACUGCGUAGUUCCUUCUGCACUGUUUUUUUCAAGUCAAUCAAACGCUGAUUCAGUGUUUUUAUUGUCUAGACAGA---AAAUUGGUUAAUAA .((((((...))))))........((...(((((((((.((.((((.((((((((...))))))))..)))).)).)).)))---))))..))...... ( -21.50) >DroVir_CAF1 13613 93 - 1 UUUGCGAACUUCGAAAUUCUUUUUGCAAGGUCUUUUUGAGGUCUCCCAAGCGCUGAUUUAACGUUUUUAUUGUCUGCAUAAG---AGAUAUG---ACAA ((((.(((((((((((..((((....))))...))))))))).)).))))............(((..((((.(((.....))---))))).)---)).. ( -14.50) >DroSec_CAF1 15984 95 - 1 UCUGCGCACUGCGUAGUUCCUUUUGCACGGUUUUCUUCAAGUCAAUCAAACGCUGAUUCAGUGUUUUUAUUGUCUA-ACACA---AAAUUGGUUAAUAA .((((((...))))))...........(((((((.....((.((((.((((((((...))))))))..)))).)).-....)---))))))........ ( -19.90) >DroSim_CAF1 13177 96 - 1 UCUGCGCACUGCGUAGUUCCUUUUGCACGGUUUUCUUCAAGUCAAUCAAACGCUGAUUCAGUGUUUUUAUUGUCUAGACGGA---AAAUUGGUAAAUAA .((((((...)))))).....(((((.(((((((((((.((.((((.((((((((...))))))))..)))).)).)).)))---)))))))))))... ( -29.70) >DroEre_CAF1 13002 99 - 1 UCUGCGCACUGCGUAGUUCCUUUUGCACGGUUUUUUUCAAGUCAAUUAAACGCUGAUUCAGUGUUUUUAUUGUCUAGGCAAAGAAGAAUUGGUUAAUUU .((((((...))))))...........(((((((((((.((.((((.((((((((...))))))))..)))).)).))....)))))))))........ ( -22.90) >DroYak_CAF1 12870 96 - 1 UCUGCGCACUGCGUAGUUCCUUUUGCACGGUUUUUUUCAAGUCAAUCAAACGCUGAUUCAGUGUUUUUAUUGUCUAGACAAA---AAAUUGGUUUAUUA .((((((...))))))...........(((((((((((.((.((((.((((((((...))))))))..)))).)).)).)))---))))))........ ( -24.00) >consensus UCUGCGCACUGCGUAGUUCCUUUUGCACGGUUUUUUUCAAGUCAAUCAAACGCUGAUUCAGUGUUUUUAUUGUCUAGACAAA___AAAUUGGUUAAUAA .((((((...))))))...........(((((((((((.((.((((.((((((((...))))))))..)))).)).)).)))...))))))........ (-16.43 = -15.22 + -1.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:04 2006