Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,966,443 – 8,966,542 |
Length | 99 |
Max. P | 0.747010 |
Location | 8,966,443 – 8,966,542 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 93.12 |
Mean single sequence MFE | -28.12 |
Consensus MFE | -21.90 |
Energy contribution | -22.66 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.10 |
Mean z-score | -1.79 |
Structure conservation index | 0.78 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.747010 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8966443 99 + 20766785 GGAAAAAGUUAACACAGCGGUAUGGCAACGCUGUUCGUCGAUUUACGUUACUGCAAAGUCGAUUCUUAUCGAUGGUAAACAACAUCGACGGUUUACGAA .......((.(((((((((.........)))))).(((((((.....(((((.....((((((....))))))))))).....)))))))))).))... ( -28.50) >DroSec_CAF1 13758 98 + 1 GGAA-AAGUUAACACAGCGGUAUGGCAACUCUGUUCGUCGAUUUACGUUACUGCAAAGUCGAUUCUUAUCGAUGGUAAACAACAUCGACGGUUUACGAA ....-..((.(((..(((((...(....).)))))(((((((.....(((((.....((((((....))))))))))).....)))))))))).))... ( -24.90) >DroSim_CAF1 10950 98 + 1 GGAA-AAGUUAACACAGCGGUAUGGCAACGCUGUUCGUCGAUUUACGUUACUGCAAAGUCGAUUCUUAUCGAUGGUAAACAACAUCGACGGUUUACGAA ....-..((.(((((((((.........)))))).(((((((.....(((((.....((((((....))))))))))).....)))))))))).))... ( -28.50) >DroEre_CAF1 10775 99 + 1 GGAAAAAGUUGACAGGCCGGUGUGGCAACGCUGUGCGUCGAUUUACGUUACUGCAAAGUCGAUUCUUAUCGAUGGUAAACAACAUCGACGGUUUACGAA .......((.(((..((((((((....)))))).))((((((.....(((((.....((((((....))))))))))).....)))))).))).))... ( -29.10) >DroYak_CAF1 10650 99 + 1 GAAAAAAGGUGGAACGCAGGCGUGGCAACGCUGUGCGUCGAUUUACGUUACUGCAAAGUCGAUUCUUAUCGAUGGUAAACAACAUCGACGGUUUACGAA ........(((((.(((((.(((....))))))))(((((((.....(((((.....((((((....))))))))))).....))))))).)))))... ( -29.60) >consensus GGAAAAAGUUAACACAGCGGUAUGGCAACGCUGUUCGUCGAUUUACGUUACUGCAAAGUCGAUUCUUAUCGAUGGUAAACAACAUCGACGGUUUACGAA .......((.(((((((((.........)))))).(((((((.....(((((.....((((((....))))))))))).....)))))))))).))... (-21.90 = -22.66 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:03 2006