Locus 2515

Sequence ID 2R_DroMel_CAF1
Location 8,960,371 – 8,960,473
Length 102
Max. P 0.528281
window4150

overview

Window 0

Location 8,960,371 – 8,960,473
Length 102
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 82.16
Mean single sequence MFE -38.85
Consensus MFE -24.04
Energy contribution -23.05
Covariance contribution -0.99
Combinations/Pair 1.42
Mean z-score -1.80
Structure conservation index 0.62
SVM decision value -0.01
SVM RNA-class probability 0.528281
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8960371 102 + 20766785
CGCUCUACCAGUUCGGAAUUCUUGAUGGCCAGCUCUUGAAUCUUGCCCUCACAGGCUGUUAGGGAUUCUAGGCGCUCGGCCAACAUGAAUUCCAGCUCGUUC
......((.((((.(((((((.((.((((((((.(((((((((((((......))).....))))))).))).))).))))).)).))))))))))).)).. ( -39.40)
>DroPse_CAF1 4638 102 + 1
UGCUCCACCAGCUCGGCGUUCUUAAUGGCCAGCUCCUGGAUCUUGGCCUCGCAGGAGGACAGCGUCUCCUGGUGCUCGGCCUGUGCCGACUUCAGCUGGUCC
......((((((((((((........(((((((.((.((((.(((.((((....)))).))).))))...)).))).))))..)))))).....)))))).. ( -40.90)
>DroEre_CAF1 4307 102 + 1
CGCUCCACCAGUUCGGCAUUCUUGAUGGCCAGCUCUUGAAUCUUGGCCUCACAGGCUGUUAGGGAUUCCAGGCGCUCGGCCAGCGUGAAUUCCAGCUCGUUC
......((.((((.((.((((.((.((((((((.((((((((((((((.....))))....)))))).)))).))).))))).)).)))).)))))).)).. ( -36.90)
>DroYak_CAF1 4483 102 + 1
CGCUCCACCAGCUCGGCAUUCUUGAUGGCCAGCUCUUGAAUCUUGGCCUCACAGGCUGUCAGGGAUUCCAGGCGCUCGGCCAGCGUGAAUUCCAGCUCGUUC
......((.((((.((.((((.((.((((((((.((((((((((((((.....))))....)))))).)))).))).))))).)).)))).)))))).)).. ( -39.30)
>DroAna_CAF1 4201 102 + 1
CGUUCCACCAGCUCGGCAUUCUUGAUGGCGAGCUCCUCGAUCUUGGCCUCGCAGGCCAUCAGUGAGUCCAGGCGCUCGGCCAGCGCGAAUUCCAACUGACUC
........(((...((.((((.((.((((((((.(((.((((.(((((.....))))).....)).)).))).)))).)))).)).)))).))..))).... ( -35.70)
>DroPer_CAF1 7501 102 + 1
UGCUCCACCAGCUCGGCGUUCUUGAUGGCCAGCUCCUGGAUCUUGGCCUCGCAGGAGGACAGCGUCUCCUGGUGCUCGGCCUGUGCCGAUUUCAGCUGGUCC
......((((((((((((........(((((((.((.((((.(((.((((....)))).))).))))...)).))).))))..)))))).....)))))).. ( -40.90)
>consensus
CGCUCCACCAGCUCGGCAUUCUUGAUGGCCAGCUCCUGAAUCUUGGCCUCACAGGCUGUCAGGGAUUCCAGGCGCUCGGCCAGCGCGAAUUCCAGCUCGUUC
.........((((.((.((((.((.((((((((.((((...((((......))))..(((...)))..)))).))).))))).)).)))).))))))..... (-24.04 = -23.05 +  -0.99)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:00 2006