Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,958,582 – 8,958,684 |
Length | 102 |
Max. P | 0.970213 |
Location | 8,958,582 – 8,958,684 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 83.46 |
Mean single sequence MFE | -29.54 |
Consensus MFE | -18.37 |
Energy contribution | -20.63 |
Covariance contribution | 2.26 |
Combinations/Pair | 1.04 |
Mean z-score | -3.03 |
Structure conservation index | 0.62 |
SVM decision value | 1.65 |
SVM RNA-class probability | 0.970213 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8958582 102 + 20766785 GUAUUCCUAGCAAUUUUAGCGACCUAGUAGCCCACAGUGCGUU-----UAGCUCACGCACACGAGAAAUCGAGGGUCAUUGUGUUUAAAUUUAAAUUUGAGCACAAA .........((.......))(((((...........((((((.-----......)))))).(((....))).))))).((((((((((((....)))))))))))). ( -32.00) >DroSec_CAF1 5927 98 + 1 GUAUUCCUAGCAAUUCUAACGACCUAGUAGCCCACAGUGCAUU-----UAGU----GCACACGAGCAAUCGAGGGUCAUUGUGUUUAAAUUUAAAUUUGUGCACAAA ......((((....((....)).))))..((((...((((((.-----..))----)))).(((....))).))))..((((((.(((((....))))).)))))). ( -26.50) >DroSim_CAF1 2582 98 + 1 GUAUUCCUAGCAAUUUUAGCGACCUAGUAGCCCACAGUGCGUU-----UAGC----GCACACGAGCAAUCGAGGGUCAUUGUGUUUAAAUUUAAAUUUGAGCACAAA .........((.......))(((((...........(((((..-----...)----)))).(((....))).))))).((((((((((((....)))))))))))). ( -31.70) >DroEre_CAF1 2503 88 + 1 GUAUUCCUAGC---------------GUAGCAUACAGUGCAUACAGUCUAGG----GCACUCGAGCAAUCGAGGGUCAUUGUGGUUAAAUUUAAAUUUGAGCACAAA ......(((((---------------(((((((...)))).))).).))))(----((.(((((....))))).))).(((((.((((((....)))))).))))). ( -28.20) >DroYak_CAF1 2626 98 + 1 GUAUUCCUAGCAAUUCUUACGCCCUAGUAGCCUACAGUGCAUG-----UGGC----GCACUCGAGAAAUCGAGGGUCAGUGUGUUUAAAUUUAAAUUUGAGCACAAA .....((..((......(((......)))(((.(((.....))-----))))----)).(((((....)))))))....(((((((((((....))))))))))).. ( -29.30) >consensus GUAUUCCUAGCAAUUCUAACGACCUAGUAGCCCACAGUGCAUU_____UAGC____GCACACGAGCAAUCGAGGGUCAUUGUGUUUAAAUUUAAAUUUGAGCACAAA .............................((((...((((................)))).(((....))).))))..((((((((((((....)))))))))))). (-18.37 = -20.63 + 2.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:59 2006