Locus 2513

Sequence ID 2R_DroMel_CAF1
Location 8,950,919 – 8,951,025
Length 106
Max. P 0.768918
window4148

overview

Window 8

Location 8,950,919 – 8,951,025
Length 106
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 94.71
Mean single sequence MFE -29.35
Consensus MFE -25.40
Energy contribution -25.64
Covariance contribution 0.24
Combinations/Pair 1.05
Mean z-score -1.39
Structure conservation index 0.87
SVM decision value 0.52
SVM RNA-class probability 0.768918
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8950919 106 - 20766785
CUGGAUUCAGAAGUCACUGCUGUUGAGCAGUAAAUGAGCGGAAGCAGCAGUUGAAAUAAAAGCCCUGCCAGCUGCAGUUUAACUAUACGUACUAUGAGUGCGAUUU
(((....))).(((.(((((.((((.((((.......((....))....(((........))).)))))))).)))))...)))...(((((.....))))).... ( -30.20)
>DroSec_CAF1 1872 106 - 1
CUGGAUUCAGAAGUCACUGCUGUUGAGCAGUAAAUGAGCGGAAGCAGCAGUUGAAAUAAAAGCCCUGCCAGCUGCAGUUUAACUAUACGUACUAUGAGUGCGAUUU
(((....))).(((.(((((.((((.((((.......((....))....(((........))).)))))))).)))))...)))...(((((.....))))).... ( -30.20)
>DroSim_CAF1 1874 106 - 1
CUGGAUUCAGAAGUCACUGCUGUUGAGCAGUAAAUGAGCGGAAGGAGCAGUUGAAAUAAAAGCCCUGCCAGCUGCAGUUUAACUAUACGUACUAUGAGUGCGAUUU
(((....))).(((.(((((.((((.((((.......((.......)).(((........))).)))))))).)))))...)))...(((((.....))))).... ( -26.90)
>DroEre_CAF1 1888 104 - 1
CUGGAUUCAGAAGCCACUGCUUUUGAGCAGUAAAUGAGCGGAAGCAGCAGUAGAAAUAAAAGCCCUGCCAGCUGCAGUUAAAGU--ACGUACGAUGAGUGCGAUUU
......((((((((....))))))))(((((......((....)).((((..............))))..))))).........--.(((((.....))))).... ( -30.34)
>DroYak_CAF1 1886 104 - 1
CGGGAUUCAGAAGUCACUGCUGUUGAGCAGUAAAUGAGCGGAAGCAGUAGUAGAAAUAAAAGCCCUGCCAGCUGCAGUUAAACU--ACGUACUACGAGUGCGAUUU
...........(((.(((((.((((.((((.......((....)).((..((....))...)).)))))))).)))))...)))--.(((((.....))))).... ( -29.10)
>consensus
CUGGAUUCAGAAGUCACUGCUGUUGAGCAGUAAAUGAGCGGAAGCAGCAGUUGAAAUAAAAGCCCUGCCAGCUGCAGUUUAACUAUACGUACUAUGAGUGCGAUUU
...............(((((.((((.((((.......((....)).((.............)).)))))))).))))).........(((((.....))))).... (-25.40 = -25.64 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:58 2006