Locus 2511

Sequence ID 2R_DroMel_CAF1
Location 8,948,282 – 8,948,378
Length 96
Max. P 0.754370
window4145

overview

Window 5

Location 8,948,282 – 8,948,378
Length 96
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 75.47
Mean single sequence MFE -24.27
Consensus MFE -13.16
Energy contribution -12.50
Covariance contribution -0.66
Combinations/Pair 1.29
Mean z-score -1.75
Structure conservation index 0.54
SVM decision value 0.48
SVM RNA-class probability 0.754370
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8948282 96 + 20766785
AACGUGGUCUAUU-UCUCGCAAGGCGGCUGAGUGAAAUGUCAAUUCAAUUUACCAUCAAGGAUGAUUGAAUUUCCCGUCCCUUUAGCCG------------------AC-CAACUU
....(((((....-..((....)).(((((((.((...(..(((((((((..((.....))..)))))))))..)..)).).)))))))------------------))-)).... ( -26.70)
>DroPse_CAF1 13727 108 + 1
CACGUG-UCAAUU-CCUUGCAAGACAGCCAAGUGAAAUGUCAAUUCAAUUUGCCAUCAAGGAUGAUUGAAUUACCCAACCUCGGGGCAAGCAGACAUAUUGCCAUAUUG------U
...(((-((....-.(((((..((((...........))))(((((((((..((.....))..))))))))).(((......))))))))..)))))............------. ( -26.40)
>DroSec_CAF1 22390 97 + 1
AACGUGGUCUAUUUUCUCGCAAGGCAGCUAAGUGAAAUGUCAAUUCAAUUUACCAUCAAGGAUGAUUGAAUUUCCCGUCCCUUUAGCCG------------------AC-CAACUU
....(((((.......((....))..((((((.((...(..(((((((((..((.....))..)))))))))..)..)).).))))).)------------------))-)).... ( -22.30)
>DroEre_CAF1 22589 96 + 1
AACGUGGUCUAUU-ACUCGCAAGGCAGCUAAGUGAAAUGUCAAUUCAAUUUACCGUCAAGGAUGAUUGAAUUUCCCGUCCCUUUAGUUA------------------CC-CAACUU
...((((......-..))))..((.(((((((.((...(..(((((((((..((.....))..)))))))))..)..)).).)))))).------------------))-...... ( -18.40)
>DroYak_CAF1 18238 97 + 1
AACGUGGUCUAUU-ACUCGCAAGGCAGCUAAGUGAAAUGUCAAUUCAAUUUACCAUCAAGGAUGAUUGAAUUUUCCGUCCCUUUAGCUA------------------CCACGACUU
..((((((.....-..((....)).(((((((.(..(((..(((((((((..((.....))..)))))))))...)))..)))))))))------------------))))).... ( -25.40)
>DroPer_CAF1 13817 108 + 1
CACGUG-UCAAUU-CCUUGCAAGACAGCCAAGUGAAAUGUCAAUUCAAUUUGCCAUCAAGGAUGAUUGAAUUACCCAACCUCGGGGCAAGCAGACAUAUUGCCAUAUUG------U
...(((-((....-.(((((..((((...........))))(((((((((..((.....))..))))))))).(((......))))))))..)))))............------. ( -26.40)
>consensus
AACGUGGUCUAUU_ACUCGCAAGGCAGCUAAGUGAAAUGUCAAUUCAAUUUACCAUCAAGGAUGAUUGAAUUUCCCGUCCCUUUAGCAA__________________AC_CAACUU
................((....))..((((((.(....(..(((((((((..((.....))..)))))))))..)....).))))))............................. (-13.16 = -12.50 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:55 2006