| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,947,997 – 8,948,100 |
| Length | 103 |
| Max. P | 0.960998 |
| Location | 8,947,997 – 8,948,100 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.05 |
| Mean single sequence MFE | -29.50 |
| Consensus MFE | -28.66 |
| Energy contribution | -28.66 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.97 |
| SVM decision value | 1.52 |
| SVM RNA-class probability | 0.960998 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8947997 103 - 20766785 --AGAAAUGU---AAUAAAA--------AAAAAA----UUAUUCUGGCCCAUGAGGGGAUCGAACCCGCGACCUUCGCGUUAUUAGCACGACGCUCUAACCAACUGAGCUAAUGGGCCAU --........---.......--------......----......((((((((..(((.......)))(((.....)))..............((((.........))))..)))))))). ( -28.60) >DroSec_CAF1 22101 107 - 1 --AGAAAUGU---AAUAAAA--------AAAAAAGUAUUUAUUCUGGCCCAUGAGGGGAUCGAACCCGCGACCUUCGCGUUAUUAGCACGACGCUCUAACCAGCUGAGCUAAUGGGCCAU --........---.......--------................((((((((..(((.......)))(((.....))).....((((.((..(((......))))).)))))))))))). ( -28.80) >DroEre_CAF1 22303 104 - 1 --AGAAAUGUAGAAAAAAAA--------AAG-AA----UCGU-GUGGCCCAUGAGGGGAUCGAACCCGCGACCUUCGCGUUAUUAGCACGACGCUCUAACCAACUGAGCUAAUGGGCCAU --..................--------...-..----....-(((((((((..(((.......)))(((.....)))..............((((.........))))..))))))))) ( -29.50) >DroYak_CAF1 17953 103 - 1 --AGAAAU--UGUAAUAAAA--------AAG-AA----UCGUCGUGGCCCAUGAGGGGAUCGAACCCGCGACCUUCGCGUUAUUAGCACGACGCUCUAACCAACUGAGCUAAUGGGCCAU --......--..........--------...-..----.....(((((((((..(((.......)))(((.....)))..............((((.........))))..))))))))) ( -29.60) >DroAna_CAF1 18116 115 - 1 AAGGAAAUUU---AAUAAAAGGGACAAAAAAAAGGUAGU--UCUUGGCCCAUGAGGGGAUCGAACCCGCGACCUUCGCGUUAUUAGCACGACGCUCUAACCAACUGAGCUAAUGGGCCAU ..........---......((((((............))--))))(((((((..(((.......)))(((.....)))..............((((.........))))..))))))).. ( -31.00) >consensus __AGAAAUGU___AAUAAAA________AAAAAA____UCAUCCUGGCCCAUGAGGGGAUCGAACCCGCGACCUUCGCGUUAUUAGCACGACGCUCUAACCAACUGAGCUAAUGGGCCAU ............................................((((((((..(((.......)))(((.....)))..............((((.........))))..)))))))). (-28.66 = -28.66 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:54 2006