Locus 2507

Sequence ID 2R_DroMel_CAF1
Location 8,942,890 – 8,942,985
Length 95
Max. P 0.500000
window4138

overview

Window 8

Location 8,942,890 – 8,942,985
Length 95
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 75.86
Mean single sequence MFE -22.00
Consensus MFE -12.90
Energy contribution -14.42
Covariance contribution 1.52
Combinations/Pair 1.10
Mean z-score -1.58
Structure conservation index 0.59
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8942890 95 - 20766785
------------UAGAAAGCUACAAAGUCUCUUCAUUAGCCUCCGAUUUCCGAGGUCGAUGAUCGCUGCUGGACUUUCCUAUCCACCUACGCU---CCCCACCCCCCAAA
------------..((((((((...(((....((((..(((((.(....).)))))..))))..)))..))).)))))...............---.............. ( -20.80)
>DroSec_CAF1 17156 91 - 1
------------UAGAAAGCUACAAAGGCGCUUCAUUAGCUUCCGAUUUCCGAGGUCGAUGAUCGCUGCUGUACUUUCCUAUCCA----CGCCUACG-CCUCCCCCC--A
------------..(((((.((((..((((..((((..(((((.(....).)))))..)))).))))..))))))))).......----........-.........--. ( -25.30)
>DroSim_CAF1 11429 96 - 1
------------UAGAAAGCUACAAAGGCGCUUCAUUAGCUUCCGAUUUCCGAGGUCGAUGAUCGCUGCUGGACUUUCCUAUCCACCUACGCCUACCCCCUCCCCCC--A
------------..((((((((....((((..((((..(((((.(....).)))))..)))).))))..))).))))).............................--. ( -22.30)
>DroEre_CAF1 16594 94 - 1
AAAGCGGAGAAGCAAAAAGCGACAAAGGCGCUUCAUUAGCUACCCAUUUCCGAGGUCGAUGAUCGC---UGGACUUUCCUAUCCGUCCACGC-----------CCCC--A
...((......)).....(((.....((((..((((..(((.(........).)))..)))).)))---)((((..........)))).)))-----------....--. ( -21.60)
>DroYak_CAF1 11649 82 - 1
------------UAAAAAGCCACGAAGGCGCUUCAUUAGCUACCCAUUUCCGAGGUCGAUGAUCGC---CGGACGCUCCUAUCCGUCUACGU-----------CCCC--A
------------.........(((..((((..((((..(((.(........).)))..)))).)))---)(((((........))))).)))-----------....--. ( -20.00)
>consensus
____________UAGAAAGCUACAAAGGCGCUUCAUUAGCUUCCGAUUUCCGAGGUCGAUGAUCGCUGCUGGACUUUCCUAUCCACCUACGC______CC_CCCCCC__A
..............(((((...((..((((..((((..(((((........)))))..)))).))))..))..)))))................................ (-12.90 = -14.42 +   1.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:48 2006