Locus 2506

Sequence ID 2R_DroMel_CAF1
Location 8,941,837 – 8,941,942
Length 105
Max. P 0.565812
window4137

overview

Window 7

Location 8,941,837 – 8,941,942
Length 105
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 87.71
Mean single sequence MFE -24.37
Consensus MFE -20.20
Energy contribution -21.10
Covariance contribution 0.90
Combinations/Pair 1.00
Mean z-score -1.42
Structure conservation index 0.83
SVM decision value 0.06
SVM RNA-class probability 0.565812
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8941837 105 + 20766785
ACCACUCGCGUGUUUGCCGGAGUCUGCCAUCCUAACAUGGCUCCGCGAAUCGCUUGAAUCACGCUGCAAAUAUACGGGUACACCUUUCACUCAAUUUCCAGAUCU
...(((((..((((((((((((((..............))))))).((.((....)).)).....)))))))..))))).......................... ( -25.74)
>DroSec_CAF1 16140 105 + 1
ACCACUCGCGUGUUUGCCGGAGUCUGCCAUACUAACAUGGCUCCGCGAAUCGCUUGAAUCACGCUGCAAAUAUACGGAUACACCUUUCAAUCAAUUUCCAGAUCU
.......(((.((((((.((((((..............)))))))))))))))..........(((.((((.....((........)).....)))).))).... ( -22.04)
>DroSim_CAF1 10394 105 + 1
ACCACUCGCGUGUUUGCCGGAGUCUGCCAUACUAACAUGGCUCCGCGAAUCGCUUGAAUCACGCUGCAAAUAUACGGAUACACCUUUCACUCAAUUUCCAGAUCU
.......(((.((((((.((((((..............)))))))))))))))..........(((.((((.....((........)).....)))).))).... ( -22.04)
>DroEre_CAF1 15634 84 + 1
ACCACUCGCGUGUUUGCCGGAGUCUGCCAUCCUGACAUGGCUCCG---------------------CAAAUAAACGGGUACACCUUUCACUCAACUUUCAGAUAU
...(((((..(((((((.((((((((.(.....).)).)))))))---------------------))))))..))))).......................... ( -24.40)
>DroYak_CAF1 10595 105 + 1
ACCACUCGCGUGUUUGCCGGAGUCUGCCAUCCUAACAUGGCUCCGCGAAUCGCUUGAAACGCGUUGCAAAUAUACGGGUACACCUUUCACUCAAUUUCCAGAUCU
...(((((..(((((((.((((((..............))))))(((..((....))..)))...)))))))..))))).......................... ( -27.64)
>consensus
ACCACUCGCGUGUUUGCCGGAGUCUGCCAUCCUAACAUGGCUCCGCGAAUCGCUUGAAUCACGCUGCAAAUAUACGGGUACACCUUUCACUCAAUUUCCAGAUCU
...(((((..(((((((.((((((..............))))))(((...)))............)))))))..))))).......................... (-20.20 = -21.10 +   0.90)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:47 2006