Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,940,239 – 8,940,365 |
Length | 126 |
Max. P | 0.997339 |
Location | 8,940,239 – 8,940,339 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 92.80 |
Mean single sequence MFE | -35.04 |
Consensus MFE | -25.32 |
Energy contribution | -26.20 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.16 |
Mean z-score | -2.08 |
Structure conservation index | 0.72 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.544571 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8940239 100 - 20766785 AGGAACAUUGGUGAACCACUUUGAUUAGGUGGUCAAAUGGUGCUCCGUAGGAAUCCCUUCAUUGGCCGUGUGUAUAGGCAAAUGUGCAUGGCACAGAAUC .(((.((((..(((.((((((.....)))))))))...)))).)))(.(((....))).).(((((((((..(((......)))..)))))).))).... ( -33.60) >DroSec_CAF1 14498 100 - 1 AGGAACAUUGGCGAACCACUCUGAUUAGAUGGUCAGAUGGUGCUCCGUAGGAAUCCCCUCACUGGCCGUGUGUAUAGGCAAAUGUGCAUGGCACAGAAUC .(((.(..(((.(.((((.(((((((....))))))))))).).)))..)...))).....(((((((((..(((......)))..)))))).))).... ( -34.40) >DroSim_CAF1 8764 100 - 1 AGGAACAUUGGCGAACCACUCUGAUUAGGUGGUCAGAUGGUGCUCCGUAGGAAUCCCCUCACUGGCCGUGUGUAUAGGCAAAUGUGCAUGGCACAGAAUC .(((.((((..(..((((((.......))))))..)..)))).)))(.(((.....)))).(((((((((..(((......)))..)))))).))).... ( -34.60) >DroEre_CAF1 14031 100 - 1 AGGAACAUUGGGGAACCACUCUGAUUAGGUGGUCAGAUGGUGCUCCGCAGGAAUCCCUUCAGUGGCCGUGUGUAUAGGCAAAUGUGCAUGUCGCAGAAUC .(((...(((.(((((((.(((((((....)))))))))))..))).)))...))).(((.(((((.(((..(((......)))..)))))))).))).. ( -33.50) >DroYak_CAF1 8974 100 - 1 AGGAACAUUGCUGAGCCACUCUGAUUAGGUGGUCAGCUAGUGCUCCGUAGGAAUCCCUUCACUGGCCGUGUGUAUAGGCCAAUGUGGAUGCCACAGAAUC .(((.(((((((((.(((((.......)))))))))).)))).)))((.((.((((...((.(((((.........))))).)).)))).))))...... ( -39.10) >consensus AGGAACAUUGGCGAACCACUCUGAUUAGGUGGUCAGAUGGUGCUCCGUAGGAAUCCCUUCACUGGCCGUGUGUAUAGGCAAAUGUGCAUGGCACAGAAUC .(((.(((((.(..((((((.......))))))..).))))).)))(.(((....))).).(((((((((..(((......)))..)))))).))).... (-25.32 = -26.20 + 0.88)
Location | 8,940,263 – 8,940,365 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 92.25 |
Mean single sequence MFE | -33.40 |
Consensus MFE | -28.40 |
Energy contribution | -28.28 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.14 |
Mean z-score | -2.42 |
Structure conservation index | 0.85 |
SVM decision value | 2.84 |
SVM RNA-class probability | 0.997339 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8940263 102 + 20766785 UAUACACACGGCCAAUGAAGGGAUUCCUACGGAGCACCAUUUGACCACCUAAUCAAAGUGGUUCACCAAUGUUCCUUGCGUGGCCAACUGGUCGUAUAACUU (((((((..(((((...(((((((......((.(.(((((((((........)).))))))).).))...)))))))...))))).....)).))))).... ( -28.00) >DroSec_CAF1 14522 102 + 1 UAUACACACGGCCAGUGAGGGGAUUCCUACGGAGCACCAUCUGACCAUCUAAUCAGAGUGGUUCGCCAAUGUUCCUUGCCUGGCCACCUGGACGUAUAACUU (((((.((.((((((..(((((((.....((((.(((..(((((........)))))))).)))).....)))))))..))))))...))...))))).... ( -35.10) >DroSim_CAF1 8788 102 + 1 UAUACACACGGCCAGUGAGGGGAUUCCUACGGAGCACCAUCUGACCACCUAAUCAGAGUGGUUCGCCAAUGUUCCUUGCCUGGCCACCUGGACGUAUAACUU (((((.((.((((((..(((((((.....((((.(((..(((((........)))))))).)))).....)))))))..))))))...))...))))).... ( -35.10) >DroEre_CAF1 14055 102 + 1 UAUACACACGGCCACUGAAGGGAUUCCUGCGGAGCACCAUCUGACCACCUAAUCAGAGUGGUUCCCCAAUGUUCCUUGCCUGGCCACCUGGUCGCUUAACUU .........(((((...(((((((...((.(((((....(((((........)))))...))))).))..)))))))...)))))................. ( -30.90) >DroYak_CAF1 8998 102 + 1 UAUACACACGGCCAGUGAAGGGAUUCCUACGGAGCACUAGCUGACCACCUAAUCAGAGUGGCUCAGCAAUGUUCCUUGCCUGGCCACCUGGUCGUAUAACCU (((((((..((((((..((((((((((...)))......(((((((((((....)).)))).)))))...)))))))..)))))).....)).))))).... ( -37.90) >consensus UAUACACACGGCCAGUGAAGGGAUUCCUACGGAGCACCAUCUGACCACCUAAUCAGAGUGGUUCACCAAUGUUCCUUGCCUGGCCACCUGGUCGUAUAACUU .........((((((..(((((((.......((((....(((((........)))))...))))......)))))))..))))))................. (-28.40 = -28.28 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:46 2006