Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,922,736 – 8,922,856 |
Length | 120 |
Max. P | 0.663378 |
Location | 8,922,736 – 8,922,856 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.71 |
Mean single sequence MFE | -36.43 |
Consensus MFE | -26.12 |
Energy contribution | -26.47 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.15 |
Mean z-score | -2.14 |
Structure conservation index | 0.72 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.663378 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8922736 120 - 20766785 GCUUGUUUACACCGAUCGUCAAGAAUUUCCCAAAACGUCACAAUCUGAUCUGAAAUGGGUGUGCGUUCGGGAAUUUCUGAACAGAUUGCGCCGCCCUGACCCGCAAUAAGCCAUUAAGCA (((((((.....(((((((..((((.(((((..((((.((((..(...........)..)))))))).))))).))))..)).)))))....((........)))))))))......... ( -30.90) >DroSim_CAF1 168304 117 - 1 GCUUGUUUACAGCGAUCGUUCAGAAUUUCCCA-AACGUCACAAUCCGAUCUGAAAUGGGUGUGCGAUCGGGAAUUUCUGAAAAGAUUG--CCGCCCUGACCCGCACUAAACCAUUAAGCA (((((......((((((.(((((((.(((((.-..((.((((.((((........))))))))))...))))).)))))))..)))))--).((........))..........))))). ( -37.50) >DroYak_CAF1 174035 115 - 1 GCUUGUUUACAGCGAUCGUUCUGAAUUUCCCC-AACGUCGCAAUCCAAUCUGAAAUGGGUGUGCGAUCGGGAAUUUCAGAGAAGAUUG--CCGCCCUGACCUCCAGGUAGCCAUUAGA-- (((........((((((.(((((((.(((((.-...(((((((((((........))))).)))))).))))).)))))))..)))))--)...((((.....)))).))).......-- ( -40.90) >consensus GCUUGUUUACAGCGAUCGUUCAGAAUUUCCCA_AACGUCACAAUCCGAUCUGAAAUGGGUGUGCGAUCGGGAAUUUCUGAAAAGAUUG__CCGCCCUGACCCGCAAUAAGCCAUUAAGCA (((((.......(((((..((((((.(((((....((.((((.((((........))))))))))...))))).))))))...)))))....((........))..........))))). (-26.12 = -26.47 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:44 2006