Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,917,513 – 8,917,633 |
Length | 120 |
Max. P | 0.724388 |
Location | 8,917,513 – 8,917,633 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.68 |
Mean single sequence MFE | -31.85 |
Consensus MFE | -30.15 |
Energy contribution | -30.43 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.06 |
Mean z-score | -1.08 |
Structure conservation index | 0.95 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.573654 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8917513 120 + 20766785 CCUCGGAUGCCGCUCGUUUACUUUUUUAUGGGCGGCGCACACAGAAAACAUAAAAACGUCUAUUGCGUGUUGCAUAUGGAAAAUUGCCAAAAGUCGGACGGCAGCAGAGAAGAAAAAAAA .(((....(((((((((..........)))))))))((....................((((((((.....))).)))))....((((...........)))))).)))........... ( -30.20) >DroSec_CAF1 162467 117 + 1 CCUCGGAUGCCGCUCGUUUACUUUUUUAUGGGCGGCGCACACAGAAAACAUAAAAACGUCUGUUGCGUGUUGCAUAUGGAAAAUUGCCAAAACUCGGACGGCAGCUUGGAAGAAAAA--- ((..((.(((((..((.....(((((((((.(((((((.((((((.............)))).)).))))))).)))))))))...........))..))))).)).))........--- ( -31.21) >DroSim_CAF1 163140 117 + 1 CCUCGGAUGCCGCUCGUUUACUUUUUUAUGGGCGGCGCACACAGAAAACAUAAAAACGUCUGUUGCGUGUUGCAUAUGGAAAAUUGCCAAAAGUCGGACGGCAGCAGGGAAGAAAAA--- .(((...(((((..((...(((((.......(((((((.((((((.............)))).)).)))))))...(((.......))))))))))..)))))...)))........--- ( -33.12) >DroEre_CAF1 166702 116 + 1 CCUCGGAUGCCGCUCGUUUACUUUUUUAUGGGUGGCGCACACAGAAAACAUAAAAACGUCUGUUGCGUGUUGCAUAUGGAAAAUUGCCAAAAGUCGGACGGCAGCAAGGAAAAAAA---- (((.(..(((((..((...(((((..((((.(..(((((.(((((.............))))))))))..).))))(((.......))))))))))..))))).).))).......---- ( -31.62) >DroYak_CAF1 168949 116 + 1 CCUCGGAUGCCGCUCGUUUACUUUUUUAUGGGCGGCGCACACAGAAAACAUAAAAACGUCUGUUGCGUGUUGCAUAUGGAAAAUUGCCAAAAGUCGGACGGCAGCAGGGAAAAAAA---- .(((...(((((..((...(((((.......(((((((.((((((.............)))).)).)))))))...(((.......))))))))))..)))))...))).......---- ( -33.12) >consensus CCUCGGAUGCCGCUCGUUUACUUUUUUAUGGGCGGCGCACACAGAAAACAUAAAAACGUCUGUUGCGUGUUGCAUAUGGAAAAUUGCCAAAAGUCGGACGGCAGCAGGGAAGAAAAA___ .(((...(((((..((.....(((((((((.(((((((.((((((.............)))).)).))))))).)))))))))...........))..)))))...)))........... (-30.15 = -30.43 + 0.28)
Location | 8,917,513 – 8,917,633 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.68 |
Mean single sequence MFE | -30.16 |
Consensus MFE | -28.72 |
Energy contribution | -28.88 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.03 |
Mean z-score | -1.16 |
Structure conservation index | 0.95 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.724388 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8917513 120 - 20766785 UUUUUUUUCUUCUCUGCUGCCGUCCGACUUUUGGCAAUUUUCCAUAUGCAACACGCAAUAGACGUUUUUAUGUUUUCUGUGUGCGCCGCCCAUAAAAAAGUAAACGAGCGGCAUCCGAGG ...........(((.(.(((((..(((((((((((.((.......))((..((((((..((((((....))))))..)))))).)).))).....))))))...))..))))).).))). ( -31.90) >DroSec_CAF1 162467 117 - 1 ---UUUUUCUUCCAAGCUGCCGUCCGAGUUUUGGCAAUUUUCCAUAUGCAACACGCAACAGACGUUUUUAUGUUUUCUGUGUGCGCCGCCCAUAAAAAAGUAAACGAGCGGCAUCCGAGG ---.....((((...(.(((((..((.((..(((.......)))...))..((((((..((((((....))))))..)))))).....................))..))))).).)))) ( -26.80) >DroSim_CAF1 163140 117 - 1 ---UUUUUCUUCCCUGCUGCCGUCCGACUUUUGGCAAUUUUCCAUAUGCAACACGCAACAGACGUUUUUAUGUUUUCUGUGUGCGCCGCCCAUAAAAAAGUAAACGAGCGGCAUCCGAGG ---.....((((..(((((((((...(((((((((.((.......))((..((((((..((((((....))))))..)))))).)).))).....))))))..))).))))))...)))) ( -30.90) >DroEre_CAF1 166702 116 - 1 ----UUUUUUUCCUUGCUGCCGUCCGACUUUUGGCAAUUUUCCAUAUGCAACACGCAACAGACGUUUUUAUGUUUUCUGUGUGCGCCACCCAUAAAAAAGUAAACGAGCGGCAUCCGAGG ----.......(((((.(((((..((((((((.(((..........)))..((((((..((((((....))))))..))))))............))))))...))..)))))..))))) ( -32.00) >DroYak_CAF1 168949 116 - 1 ----UUUUUUUCCCUGCUGCCGUCCGACUUUUGGCAAUUUUCCAUAUGCAACACGCAACAGACGUUUUUAUGUUUUCUGUGUGCGCCGCCCAUAAAAAAGUAAACGAGCGGCAUCCGAGG ----.....(((..(((((((((...(((((((((.((.......))((..((((((..((((((....))))))..)))))).)).))).....))))))..))).))))))...))). ( -29.20) >consensus ___UUUUUCUUCCCUGCUGCCGUCCGACUUUUGGCAAUUUUCCAUAUGCAACACGCAACAGACGUUUUUAUGUUUUCUGUGUGCGCCGCCCAUAAAAAAGUAAACGAGCGGCAUCCGAGG ........((((..(((((((((...((((((.(((..........)))..((((((..((((((....))))))..))))))............))))))..))).))))))...)))) (-28.72 = -28.88 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:40 2006