Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,633,302 – 1,633,402 |
Length | 100 |
Max. P | 0.946902 |
Location | 1,633,302 – 1,633,402 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 95.00 |
Mean single sequence MFE | -29.02 |
Consensus MFE | -25.99 |
Energy contribution | -26.68 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.09 |
Mean z-score | -2.30 |
Structure conservation index | 0.90 |
SVM decision value | 1.37 |
SVM RNA-class probability | 0.946902 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1633302 100 + 20766785 UCUCCAGCUCGCUGUUCGUAUUUUAGUAAUACGAACCAAACAGAACGGAAAAUUCUGCCAGCAGAAAAAUUCGUUACGCCUCGAGUGAUGGAUUUGAGGA ..(((((((((..(((((((((.....))))))))).......((((((...(((((....)))))...))))))......)))))..))))........ ( -28.70) >DroSec_CAF1 19092 100 + 1 UCUCCAGCUCGCUGUUCGUAUUUUAGUAAUACGAACCAAACAGAACGGAAAAUUCUGCCAGCUGAAAAAUUCGUUACGCCUCGAGUGAUGGAUUUGAGGA (((((((((.((.(((((((((.....))))))))).....((((.......)))))).)))))..(((((((((((.......))))))))))))))). ( -31.80) >DroSim_CAF1 17522 100 + 1 UCUCCAGCUCGCUGUUCGUAUUUUAGUAAUACGAACCAAACAGAACGGAAAAUUCUGCCAGCUGAAAAAUUCGUUACGCCUCGAGUGAUGGAUUUGAGGA (((((((((.((.(((((((((.....))))))))).....((((.......)))))).)))))..(((((((((((.......))))))))))))))). ( -31.80) >DroEre_CAF1 21580 100 + 1 UCGCCAGCUCCCUGUUCGUAUUUUAGUAAUACGAUUGAAACGGAACGGAAAAUUCUGCCAGUUGAAAAAUUCGUUACGCCUUGAGUGAUGGAUUUUAGGA ....(((((..(((((((((((.....))))))).....))))..((((....))))..))))).((((((((((((.......)))))))))))).... ( -23.80) >consensus UCUCCAGCUCGCUGUUCGUAUUUUAGUAAUACGAACCAAACAGAACGGAAAAUUCUGCCAGCUGAAAAAUUCGUUACGCCUCGAGUGAUGGAUUUGAGGA (((((((((.((.(((((((((.....))))))))).....((((.......)))))).)))))..(((((((((((.......))))))))))))))). (-25.99 = -26.68 + 0.69)
Location | 1,633,302 – 1,633,402 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 95.00 |
Mean single sequence MFE | -27.29 |
Consensus MFE | -21.32 |
Energy contribution | -23.07 |
Covariance contribution | 1.75 |
Combinations/Pair | 1.00 |
Mean z-score | -2.12 |
Structure conservation index | 0.78 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.554682 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1633302 100 - 20766785 UCCUCAAAUCCAUCACUCGAGGCGUAACGAAUUUUUCUGCUGGCAGAAUUUUCCGUUCUGUUUGGUUCGUAUUACUAAAAUACGAACAGCGAGCUGGAGA ........((((...(((((((((.((((.....(((((....))))).....)))).))))).(((((((((.....)))))))))..)))).)))).. ( -29.80) >DroSec_CAF1 19092 100 - 1 UCCUCAAAUCCAUCACUCGAGGCGUAACGAAUUUUUCAGCUGGCAGAAUUUUCCGUUCUGUUUGGUUCGUAUUACUAAAAUACGAACAGCGAGCUGGAGA .((((.............))))..........(((((((((.(((((((.....))))).....(((((((((.....))))))))).)).))))))))) ( -30.62) >DroSim_CAF1 17522 100 - 1 UCCUCAAAUCCAUCACUCGAGGCGUAACGAAUUUUUCAGCUGGCAGAAUUUUCCGUUCUGUUUGGUUCGUAUUACUAAAAUACGAACAGCGAGCUGGAGA .((((.............))))..........(((((((((.(((((((.....))))).....(((((((((.....))))))))).)).))))))))) ( -30.62) >DroEre_CAF1 21580 100 - 1 UCCUAAAAUCCAUCACUCAAGGCGUAACGAAUUUUUCAACUGGCAGAAUUUUCCGUUCCGUUUCAAUCGUAUUACUAAAAUACGAACAGGGAGCUGGCGA .........(((.(.(((.(((((.((((.....(((........))).....)))).)))))...(((((((.....)))))))...))).).)))... ( -18.10) >consensus UCCUCAAAUCCAUCACUCGAGGCGUAACGAAUUUUUCAGCUGGCAGAAUUUUCCGUUCUGUUUGGUUCGUAUUACUAAAAUACGAACAGCGAGCUGGAGA .((((.............))))..........(((((((((((((((((.....))))))))..(((((((((.....)))))))))....))))))))) (-21.32 = -23.07 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:32 2006