Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,916,890 – 8,917,010 |
Length | 120 |
Max. P | 0.862319 |
Location | 8,916,890 – 8,917,010 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -42.12 |
Consensus MFE | -39.94 |
Energy contribution | -39.98 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.42 |
Structure conservation index | 0.95 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.862319 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8916890 120 - 20766785 CUUGUCCGUGUAAUUGAUGCGUUAAUCCGCAUAUUGACAGCGGUGCCUGCGGUGGCUUUAUGGAAAUAUGUCCCCAGGCUCAGCCGCAUCGGUACUUCGCGGCCCUGUUGAACGGAUUUG ...((((((.......(((((......))))).(..((((.((.(((((.((.(((..(((....))).)))))))))).).(((((...........))))))))))..)))))))... ( -44.30) >DroSec_CAF1 161860 120 - 1 CUUGUCCGUGUAAUUGAUUCGUUAAUCCGCAUAUUGACAGCGGUGCCUGCGGUGGCUUUAUGGAAAUAUGUCCCCAGGCUCAGCCGCAUCGGUACUUCGCGGCCCUGUUGAAAGGAUUUG .....(((((..((((((..((((((......)))))).((((((((((.((.(((..(((....))).))))))))))...)))))))))))....))))).(((......)))..... ( -39.80) >DroSim_CAF1 162534 120 - 1 CUUGUCCGUGUAAUUGAUGCGUUAAUCCGCAUAUCGACAGCGGUGCCUGCGGUGGCUUUAUGGAAAUAUGUCCCCAGGCUCAGCCGCAUCGGUACUUCGCGGCCCUGUUGAAAGGAUUUG ...((((.........(((((......))))).(((((((.((.(((((.((.(((..(((....))).)))))))))).).(((((...........)))))))))))))..))))... ( -43.30) >DroEre_CAF1 166092 120 - 1 CUUGUCCGUUUAAUUGAUGCGUUAAUCCGCAUAUUGACAGCGGUGCCUGCGGUGGCUUUAUGGAAAUAUGUCCCCAGGCUCAGCCGCAUCGCUACUUCGCGGCCCUGUUGAAAGGAUUUG ...((((.........(((((......))))).(..(((((((((((((.((.(((..(((....))).))))))))))...))))).((((......))))...)))..)..))))... ( -41.30) >DroYak_CAF1 168320 120 - 1 CUUGUCCGUGUAAUUGAUGCGUUAAUCCGCAUAUUGACAGCGGUGCCUGCGGUGGCUUUAUGGAAAUAUGUCCCCAGGCUCAGCCGCAUCGGUACUUCGCGGCCCUGUUGAAAGGAUUUG .....(((((..(((((((((.....((((.........)))).(((((.((.(((..(((....))).)))))))))).....)))))))))....))))).(((......)))..... ( -41.90) >consensus CUUGUCCGUGUAAUUGAUGCGUUAAUCCGCAUAUUGACAGCGGUGCCUGCGGUGGCUUUAUGGAAAUAUGUCCCCAGGCUCAGCCGCAUCGGUACUUCGCGGCCCUGUUGAAAGGAUUUG ...((((.........(((((......))))).(((((((.((.(((((.((.(((..(((....))).)))))))))).).(((((...........)))))))))))))..))))... (-39.94 = -39.98 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:35 2006