Locus 2498

Sequence ID 2R_DroMel_CAF1
Location 8,916,584 – 8,916,704
Length 120
Max. P 0.784649
window4123

overview

Window 3

Location 8,916,584 – 8,916,704
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 90.12
Mean single sequence MFE -33.86
Consensus MFE -26.72
Energy contribution -27.20
Covariance contribution 0.48
Combinations/Pair 1.08
Mean z-score -1.70
Structure conservation index 0.79
SVM decision value 0.57
SVM RNA-class probability 0.784649
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8916584 120 - 20766785
UGCCCCUGAACUAUCCGCUAAUCUGUGGCGGGAUUUUUGCCGCAAUUUGUCAAUAUUCAGGAAAAUAAUGCAAAAUCACGAAAGACCACAUUGCGUAUACGCAACGUUAGCAUUGAUAGC
....((((((.(((..((.(((.((((((((.....))))))))))).))..)))))))))....((((((.......(....)...((.(((((....))))).))..))))))..... ( -32.80)
>DroSec_CAF1 161563 118 - 1
UGCC-CUGAACAAUCCGCUAAUCUGUGGCGGGAGU-UUGCCGCAAUUUGUCAAUAUGCAGGAAAAUAAUACAAAAUCACGCAGGACCACAUUGCGUAUACGCAACGUUAGCAUUGACAGU
(((.-.(((((..(((((((.....))))))).))-)))..)))..((((((((.(((..((.............))..))).(...((.(((((....))))).))...))))))))). ( -28.52)
>DroSim_CAF1 162236 119 - 1
UGCCCCUGAACUAUCCGCUAAUCUGUGGCGGGAGU-UUGCCGCAAUUUGUCAAUAUGCAGGAAAAUAAUGCAAAAUCACGCAAGACCAUAUUGCGUAUACGCAACGUUAGCAUUGACAGU
(((...((((((.(((((((.....))))))))))-)))..)))..((((((((.((((.........)))).....((((((.......))))))....((.......)))))))))). ( -32.70)
>DroEre_CAF1 165780 119 - 1
UGCCCGUGAACUAUCCGCUAAUCUGUGGCGGCAGC-UCGCCGCAAUUUGUCAAUAUUCACGAGUAUAAUGCAGAAUCACGCAUGGCCACAUUGCGUAUACGCAACGUUAGCAUUGCGAAU
(((.((((((.(((..((.(((.((((((((....-))))))))))).))..))))))))).))).............((((..((.((.(((((....))))).))..))..))))... ( -36.40)
>DroYak_CAF1 168015 119 - 1
UGCCCCUGAACUAUCCGCUAAUCUGUGGCGGCAGU-UCGCCGCAAUUUGUCAAUAUUCAGGAAUAUAAUGCAAAAUCACGGAAGGCCACAUUGCGUAUACGCAACGUUGGCACUGCGAGU
....((((((.(((..((.(((.((((((((....-))))))))))).))..))))))))).......((((......(....)(((((.(((((....))))).).))))..))))... ( -38.90)
>consensus
UGCCCCUGAACUAUCCGCUAAUCUGUGGCGGGAGU_UUGCCGCAAUUUGUCAAUAUUCAGGAAAAUAAUGCAAAAUCACGCAAGACCACAUUGCGUAUACGCAACGUUAGCAUUGACAGU
....((((((.(((..((.(((.((((((((.....))))))))))).))..)))))))))....((((((.......(....)...((.(((((....))))).))..))))))..... (-26.72 = -27.20 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:34 2006