Locus 2497

Sequence ID 2R_DroMel_CAF1
Location 8,916,216 – 8,916,330
Length 114
Max. P 0.523811
window4122

overview

Window 2

Location 8,916,216 – 8,916,330
Length 114
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 88.74
Mean single sequence MFE -33.04
Consensus MFE -21.20
Energy contribution -21.00
Covariance contribution -0.20
Combinations/Pair 1.08
Mean z-score -2.53
Structure conservation index 0.64
SVM decision value -0.02
SVM RNA-class probability 0.523811
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8916216 114 + 20766785
UAUAGUC-----CCCC-AACAAUGCCAAUGAAGCAGGCAAUACGAAUAAACGCAUUGUUUGCUGUUUAGUUAACAAAAUUAUCGGGGGAAUGGCUUGUGUACAUAUAUCCUCUUGUAUUC
.....((-----((((-..............((((((((((.((......)).))))))))))(((.....))).........)))))).........(((((..........))))).. ( -27.70)
>DroSec_CAF1 161199 114 + 1
UAUAGUC-----CCCC-AACAAUGCCAAUGAAGCAGGCAAUACGAAUAAACGCAUUGUUUGCUGUUUAGUUUGCAAAAUUAUCGGGGGAAUGACUUGUGUACAUAUAUCCCCUUGUAUUA
.....((-----((((-.....(((.(((..((((((((((.((......)).)))))))))).....))).)))........)))))).........(((((..........))))).. ( -28.62)
>DroSim_CAF1 161870 114 + 1
UAUAGUC-----CCCC-AACAAUGCCAAUGAAGCAGGCAAUACGAAUAAACGCAUUGUUUGCUGUUUAGUUUGGGAAAUUAUCGGGGGAAUGACUUGUGAACAUAUAUCCUCUUGUAUUC
.....((-----((((-.......((((...((((((((((.((......)).)))))))))).......))))((.....)))))))).............(((((......))))).. ( -28.70)
>DroEre_CAF1 165412 111 + 1
UAUAGUC-----CCCCAAACAAUGCCAAUGAAGCAGGCAAUACGAAUAAACGCAUUGUUUGCUGUUUAGUUGGCAGAAUUAUCGGGGGAUUGGCUCGUG----UAUAUCCUCUUGUACUC
..(((((-----((((......(((((((..((((((((((.((......)).)))))))))).....)))))))((....)))))))))))......(----((((......))))).. ( -41.60)
>DroYak_CAF1 167633 116 + 1
UACAGUCCUCCCCCCCAAACAAUGCCAAUGAAGCAGGCAGUACGAAUAAACGCAUUGUUUGCUGUUUAGUUUGGCACAUUAUCGGGGGAUUGGCGGGUA----UAUAUCCUCUUGUAUUC
(((((((.((((((........((((((...((((((((((.((......)).)))))))))).......)))))).......))))))..)))((((.----...))))...))))... ( -38.56)
>consensus
UAUAGUC_____CCCC_AACAAUGCCAAUGAAGCAGGCAAUACGAAUAAACGCAUUGUUUGCUGUUUAGUUUGCAAAAUUAUCGGGGGAAUGGCUUGUG_ACAUAUAUCCUCUUGUAUUC
....(((.....((((...............((((((((((.((......)).))))))))))...(((((.....)))))..))))....))).......................... (-21.20 = -21.00 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:33 2006