Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,915,101 – 8,915,218 |
Length | 117 |
Max. P | 0.697646 |
Location | 8,915,101 – 8,915,218 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.84 |
Mean single sequence MFE | -53.65 |
Consensus MFE | -43.84 |
Energy contribution | -43.52 |
Covariance contribution | -0.31 |
Combinations/Pair | 1.09 |
Mean z-score | -1.70 |
Structure conservation index | 0.82 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.697646 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8915101 117 - 20766785 UCUGGUGGGCGCUGUUGGUGUUCAGUAGUCCUGGCUCCGCCCAGCAGAUCUCCG---UCGAGGAGGAGAAACACCCGGUUGAGGGCAGCGAUAAGUUGCUCAGCUUCAGCCGGGCAGUGG ((((.((((((..((..(..(......)..)..))..)))))).))))(((((.---.......)))))....((((((((((((((((.....)))))))....)))))))))...... ( -56.50) >DroSec_CAF1 160066 117 - 1 UCUGGUGGGCGCUGAUGGUGUUCAGUAGUCCUGGCUCCGCCCAGCAGAUCUCCG---CCGAGGAGGAGAAGCACCCGGUGGAGGGCAGCGAUAAGUUGCUCAGCUUCAGCCGGGCAGUGG ((((.((((((((((......)))))(((....)))..))))).))))(((((.---(....).)))))....((((((((((((((((.....))))))...))))).)))))...... ( -53.40) >DroEre_CAF1 164310 117 - 1 UCUGGUGGGCGCUGUUGGUGUUCAGUAGUCCUGGCUACGCGCAGCAGAUCUCCA---GCGAGGAGCAGAAGCAGCCGGCGGAGGGCAGCGAUAAGUUGCUUAGCUUCAGCCGGGCAGUGG .(((.(.(((((((((..(((((.(((((....))))).(((............---)))..)))))..)))))).(((...(((((((.....))))))).)))...))).).)))... ( -45.30) >DroYak_CAF1 166436 120 - 1 UCUGGUGGGCGCUGAUGGUGUUCAGCAGUCCUGGCCACGCCCAGCAGAUCUCCACCGGCGAGGAGCAGAAGCAGCCGGUGGAGGGCAGCGACAAGUUGCUCAGCUUCAGCCGGGCAGUGG ......(((((((((......))))).))))...((((((((.((.....(((((((((.....((....)).)))))))))(((((((.....))))))).......)).)))).)))) ( -59.40) >consensus UCUGGUGGGCGCUGAUGGUGUUCAGUAGUCCUGGCUACGCCCAGCAGAUCUCCA___GCGAGGAGCAGAAGCACCCGGUGGAGGGCAGCGAUAAGUUGCUCAGCUUCAGCCGGGCAGUGG ((((.(((((((((........)))).((....))...))))).)))).((((........)))).........(((((.(((((((((.....)))))))....)).)))))....... (-43.84 = -43.52 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:27 2006