Locus 2494

Sequence ID 2R_DroMel_CAF1
Location 8,912,226 – 8,912,343
Length 117
Max. P 0.925680
window4115

overview

Window 5

Location 8,912,226 – 8,912,343
Length 117
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 87.48
Mean single sequence MFE -39.12
Consensus MFE -32.26
Energy contribution -31.58
Covariance contribution -0.69
Combinations/Pair 1.29
Mean z-score -2.10
Structure conservation index 0.82
SVM decision value 1.17
SVM RNA-class probability 0.925680
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8912226 117 + 20766785
GAUUUAAUAGGUGGCGAAAUGGGCUUUUCGGGCAAUUGUUGAAUAUUUCGUUGCACC---GGCAUUUGCUGUUGCGGCAACUGGAAUUGUUGUGGCAUUAGUGGCUGUUGUGGCAUCAAU
.(((((((((.((.(((((......)))).).)).))))))))).....((..((.(---(((....((((.(((.(((((.......))))).))).)))).)))).))..))...... ( -37.40)
>DroSec_CAF1 157215 117 + 1
GAUUUAAUAGGUGGCGAAAUGGGCUUUUCGGGCAAUUGUUGGAUAUUUCGUUGCACC---GGCAUUUGCUGUUGCGGCAACUGGAAUUGAUGCGGCAUCGGUUGCUGUUGUGGCAUUAAU
..........(..((((((((......((.(((....))).))))))))))..)..(---(((....)))).(((.(((((.(.((((((((...)))))))).).))))).)))..... ( -37.20)
>DroEre_CAF1 161498 117 + 1
GAUUUAAUGGGUGGCGAAAUGGGCUUGUUGGCCAGUUGGUGGAUAUUUCGUUGCACG---GGCAUUUGCUGUUGCGGCAACUGGAAUUGUUGCUGCAAUGGUGGCUGCUGUGGCACAACU
.........(((.((..((((((..((((.(((....))).)))).)))))).((((---(.((.(..(((((((((((((.......)))))))))))))..).)))))))))...))) ( -44.00)
>DroYak_CAF1 163615 120 + 1
GACUUAAUAGGUGGCGAAAUGGGCUUGUUGGGCAUUUGCUGGGUGUUUCGUUGCACGGGGGGCAUUUGCUGUUGCGGCAACUGGAAUUGUUGUUGCACUGGUUGCUGUUGUGGCAUAAAU
..(((.....(..(((((((..((((....(((....))))))))))))))..)....))).....(((..(.((((((((..(...(((....))))..)))))))).)..)))..... ( -37.90)
>consensus
GAUUUAAUAGGUGGCGAAAUGGGCUUGUCGGGCAAUUGUUGGAUAUUUCGUUGCACC___GGCAUUUGCUGUUGCGGCAACUGGAAUUGUUGCGGCAUUGGUGGCUGUUGUGGCAUAAAU
..........(..((((((((......((.(((....))).))))))))))..)............(((..(.(((((((((((...((......))))))))))))).)..)))..... (-32.26 = -31.58 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:26 2006