Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,909,037 – 8,909,148 |
Length | 111 |
Max. P | 0.500000 |
Location | 8,909,037 – 8,909,148 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 82.85 |
Mean single sequence MFE | -42.16 |
Consensus MFE | -23.91 |
Energy contribution | -25.55 |
Covariance contribution | 1.64 |
Combinations/Pair | 1.15 |
Mean z-score | -2.33 |
Structure conservation index | 0.57 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8909037 111 - 20766785 ----GGAUCAAAUUCGAUUAGUACGCGAUGCAAGUGCCCCUGCUCCACCGGAGCACCCAGAUGGUGCUGCUGAAGAAGCAGAUCCGGCGGAAGGCGAAGGAGUUGCGUCUGCGAA ----.((((......))))....((((((((((.(.((..((((((.((((((((((.....)))))((((.....))))..))))).)))..)))..))).))))))).))).. ( -46.00) >DroSec_CAF1 153895 111 - 1 ----GGAUCAAAUUCAAUCAGUACGCGAUGCAAGUGCCCCUGCUCCACCGGAGCACCCAGAUGGUGCUGCUGAAGAAGCAAAUCCGGCGUAAGGCGAAGGAGUUGCGUCUGCGAA ----...................((((((((((.(.((..((((.(.((((((((((.....)))))((((.....))))..))))).)...))))..))).))))))).))).. ( -40.80) >DroSim_CAF1 154461 111 - 1 ----GGAUCAAAUUCGAUCAGUACGCGAUGCAAGUGCCACUGCUCCACCGGAGCACCCAGAUGGUGCUGCUGAAGAAGCAGAUCCGGCGGAAGGCGAAGGAGUUGCGUCUGCGAA ----.((((......))))....((((((((((.(.((..((((((.((((((((((.....)))))((((.....))))..))))).)))..)))..))).))))))).))).. ( -48.10) >DroEre_CAF1 157305 111 - 1 ----GAAUCAAAUUCGAUCAGUACGCGAUGUAUGUGCCCCUGCUCCACCGGAGCACCCAGAUGGUGCUACUGAAGAGGCAGAUCCGCCGGAAGGCUAAGGAGUUGCGACUGCGAA ----........((((..((((.((((((..........((((..(..(((((((((.....)))))).)))..)..)))).((((((....)))...))))))))))))))))) ( -42.80) >DroYak_CAF1 160326 111 - 1 ----GAAUCAAAUUCGAUCGGUACGCGAUGUAUGUGCCCCUGCUCCACAGGAGCACCCAGAUGGUGCUGCUGAAGAGGCAGAUACGGCGGAAGGCCAAGGAGUUGCGAAUGCGAA ----.............(((((.((((((((((.((((.((......(((.((((((.....)))))).))).)).)))).))))(((.....))).....)))))).)).))). ( -40.40) >DroAna_CAF1 154093 115 - 1 UAUUGAAAAAAAGAGAAUUGUGUCGAGAUGCAGUUCCCCCUGCUACAUCGCAGCACCCAGAUAACGCUGCUGCGGAAGCAGAUCAAGCGAAAGAGCGAGGAGGUGAGACGGCAGA ..............(((((((((....)))))))))...(((((...((((..(..(.......((((.((((....))))....)))).......)..)..))))...))))). ( -34.84) >consensus ____GAAUCAAAUUCGAUCAGUACGCGAUGCAAGUGCCCCUGCUCCACCGGAGCACCCAGAUGGUGCUGCUGAAGAAGCAGAUCCGGCGGAAGGCGAAGGAGUUGCGACUGCGAA ............................((((..(((....(((((.((((((((((.....)))))((((.....))))..)))))(....).....))))).)))..)))).. (-23.91 = -25.55 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:20 2006