Locus 2490

Sequence ID 2R_DroMel_CAF1
Location 8,906,581 – 8,906,701
Length 120
Max. P 0.555163
window4108

overview

Window 8

Location 8,906,581 – 8,906,701
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 85.56
Mean single sequence MFE -38.17
Consensus MFE -27.53
Energy contribution -26.66
Covariance contribution -0.87
Combinations/Pair 1.28
Mean z-score -1.48
Structure conservation index 0.72
SVM decision value 0.04
SVM RNA-class probability 0.555163
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8906581 120 + 20766785
UCUUCUCUUACGCUCCUCGCGCUCCAAUCGUUCUGCAUUGAGCUCCUGCUCGAGGAGUUUAUUGUACAUUCCGCCGUUCAUCUUGAUUUCCUGCGACUGGCGUGAGCUGUGAGAUGGGUC
.((..(((((((...((((((((..........((((.(((((((((.....))))))))).)))).....(((.(.((.....))....).)))...)))))))).)))))))..)).. ( -37.60)
>DroSec_CAF1 151430 120 + 1
UCUUCUCCUGCGCUCCUCGCGCUCCAAUUGCUCUGCAUUGAGCUCCUGCUCGAGGAGUUUAUUGUACAGUCCACCGUCCAUCUUGAUUUCCUGCGACAGUCUUGAGCUGUGAGGUGGGUC
.........((.(.((((((((((.....(((.((((.(((((((((.....))))))))).)))).))).....(((((...........)).)))......)))).)))))).).)). ( -38.10)
>DroSim_CAF1 151616 120 + 1
UGUUCUCCUGCGCUCCUCGCGCUCCAAUUGCUCUGCAUUGAGCUCCUGCUCGAGGAGUUUAUUGUACAGUCCGCCGUCCAUCUUGAUUUCCUGCGACUGUCUUGAGCUGUGAGGUGGGUC
.........((.(.((((((((((((((.(((((...((((((....)))))))))))..)))).((((((.((.(((......))).....))))))))...)))).)))))).).)). ( -40.20)
>DroYak_CAF1 157849 120 + 1
CCUCCUCCUGCGCUCCUCGCGCUCCAAUCGCUCCGCCCUGAGCUCCUGCUCGAUGAGCUUCUUGUACAGGGCGCUGUCCAUCCUCAUGUCCUGCGACUGCCGCCGGCUGCCAGAUGUCUC
.......(((.((..((.(((...((.((((..(((((((.((....((((...)))).....)).)))))))..(..(((....)))..).)))).)).))).))..)))))....... ( -36.80)
>consensus
UCUUCUCCUGCGCUCCUCGCGCUCCAAUCGCUCUGCAUUGAGCUCCUGCUCGAGGAGUUUAUUGUACAGUCCGCCGUCCAUCUUGAUUUCCUGCGACUGUCGUGAGCUGUGAGAUGGGUC
...........((((((((.((.......((((......))))....)).))))))))...........((((((...((.(((...................))).))...)))))).. (-27.53 = -26.66 +  -0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:18 2006